View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_30 (Length: 366)
Name: NF18786_low_30
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 40758025 - 40758262
Alignment:
| Q |
1 |
gctacctattttgagcttttaacatataacttttgtagggtcatatgctaacgtgtgctcttagaagttaaggattccaatatatacaaatcaaattaca |
100 |
Q |
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| T |
40758025 |
gctacctattttgagcttttaacatataacttttgtagggtcatatgctaacgtgtgctcttagaagttaaggattccaatatatacaaatcaaattaca |
40758124 |
T |
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| Q |
101 |
atcaaattttaatacaaaatgacctatcacgttgtctcttcttgtaggcacactgctatatgaatgatcagccaccatcatgaatacaatatgaatcaga |
200 |
Q |
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| T |
40758125 |
atcaaattttaatacaaaatgacctatcacgttgtctcttcttgtaggcacactgcaatatgaatgatcagccaccatcatgaatataatatgaatcata |
40758224 |
T |
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| Q |
201 |
gagacatcagacatgagataaatgatcaaaccactgcc |
238 |
Q |
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| T |
40758225 |
gagacatcagacatgagatgaatgatcaaaccactgcc |
40758262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 40758314 - 40758381
Alignment:
| Q |
290 |
taagcattgtgatattattgatgttgaaagaactgttatgctgatgttatttataccgaaagaataat |
357 |
Q |
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| T |
40758314 |
taagcattgtgatattattgatgttgaaagaattgttatgctgatgttatttatactgaaagaataat |
40758381 |
T |
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