View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_31 (Length: 349)
Name: NF18786_low_31
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_31 |
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| [»] chr8 (4 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 176; Significance: 9e-95; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 149 - 349
Target Start/End: Original strand, 18671397 - 18671593
Alignment:
| Q |
149 |
tagataacattttctagaagcacttcgagatgcaaagtcattaattatttattatacccataatgtttattttttctcgtaagaaaaaaggaatgacgtt |
248 |
Q |
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| T |
18671397 |
tagataacattttctagaagcacttcgagatgcaaagtcattaattatt----atatccataatgtttattttttctcgtaagaaaaaaggaatgacgtt |
18671492 |
T |
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| Q |
249 |
tttgttaagggttataccaaaggtttgcattggattgactcatcgactggtggttggatgttgataaacaacattcatagcataggacatcaatctcttt |
348 |
Q |
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| T |
18671493 |
tttgttaagggttataccaaaggtttgcactggattgactcatcgactggtggttggatgttgataaacaacattcatagcataggacatcaatctcttt |
18671592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 148 - 349
Target Start/End: Complemental strand, 13111783 - 13111586
Alignment:
| Q |
148 |
atagataacattttctagaagcacttcgagatgcaaagtcattaattatttattatacccataatgtttatttttt-ctcgtaagaaaaaaggaatgacg |
246 |
Q |
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| T |
13111783 |
atagataacattttctagaagcatttctagatgcaaagtcattaataatt----atatccataatgtttatttttttctcgtaagaaaaaaggaatgacg |
13111688 |
T |
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| Q |
247 |
tttttgttaagggttataccaaaggtttgcattggattgactcatcgactggtggttggatgttgataaacaacattcatagcataggacatcaatctct |
346 |
Q |
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| T |
13111687 |
tttttgttaagggttagaccaaagatttgcacgggattgactcattgactggtagttggatgttgat-aacaacattcatagcataggacatcaatctct |
13111589 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 13112456 - 13112315
Alignment:
| Q |
1 |
cgccataagccgcaatggcgtgtttatatagttggattattggccatctgcatattccctaaattttttattttacatttgttgcaccactaatttatgt |
100 |
Q |
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| T |
13112456 |
cgccataagccgcaatggcgtgtttatatggc-ggattattggccatctgcatattccctaaattttttattttacatttgttgcaccactaatttatgt |
13112358 |
T |
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| Q |
101 |
aaggtaaaataagagcaggtaaattacaagcatttatgtgcat |
143 |
Q |
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| T |
13112357 |
aaggtaaaataagagcaggtaaattacaagcatttatgtgcat |
13112315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 18671366 - 18671394
Alignment:
| Q |
1 |
cgccataagccgcaatggcgtgtttatat |
29 |
Q |
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| T |
18671366 |
cgccataagccgcaatggcgtgtttatat |
18671394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 18513327 - 18513383
Alignment:
| Q |
88 |
cactaatttatgtaaggtaaaa-taagagcaggtaaattacaagcatttatgtgcat |
143 |
Q |
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| T |
18513327 |
cactaatttatgtaagctaaacgtaagagcagataaattacaagcatttatgtgcat |
18513383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18512940 - 18512995
Alignment:
| Q |
1 |
cgccataagccgcaatggcgtgtttatatagttggattattggccatctgcatattc |
57 |
Q |
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| T |
18512940 |
cgccataagctgcaatggcgtgtttacatag-cggtttattggccatcggcatattc |
18512995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 87 - 143
Target Start/End: Complemental strand, 14516316 - 14516257
Alignment:
| Q |
87 |
ccactaatttatgtaaggtaaa-ataagagcagg--taaattacaagcatttatgtgcat |
143 |
Q |
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| T |
14516316 |
ccactaatttatgtaagctaaacataagagcagccctaaattacaagcatttatgtgcat |
14516257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 14516711 - 14516658
Alignment:
| Q |
1 |
cgccataagccgcaatggcgtgtttatatagttggattattggccatctgcatat |
55 |
Q |
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| T |
14516711 |
cgccataagctgcaatggcgtgtttatatag-aggattattagccatttgcatat |
14516658 |
T |
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