View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_33 (Length: 299)
Name: NF18786_low_33
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 5664855 - 5665016
Alignment:
| Q |
1 |
caattgcacccatataagtctataggtgcttgaagatgttttgtggatgttgctgtaaatttttattcctggtttaatcgtgatgggtttcgatgattat |
100 |
Q |
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| T |
5664855 |
caattgcacccatataagtctataggtgcttgaagatgttttgtggatgttgctgtaaatttttattcctagtttaatcgtgatgggtttcgatgattat |
5664954 |
T |
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| Q |
101 |
atcttgtataatgtacatgcttttacgattgacaaaaaccattaattgtaatcctcaagaaa |
162 |
Q |
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| T |
5664955 |
atcttgtataatgtacatgcttttatgattgacaaaaaccattaattgtaatcctcaagaaa |
5665016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 173 - 281
Target Start/End: Original strand, 5665054 - 5665162
Alignment:
| Q |
173 |
ctattcgttgacaatgtttccttcattttccatcaaaaaatttccatcttatatttaactcattcatgtatgtaaaactaccattcccacttaaacattt |
272 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
5665054 |
ctattcgttgacaatgtttccttcgttttccatcaaaaaatttccatcttatatttaactcattcatgtatgtaaaattaccattcccacttaaacattt |
5665153 |
T |
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| Q |
273 |
tttatgcat |
281 |
Q |
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||||||||| |
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| T |
5665154 |
tttatgcat |
5665162 |
T |
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