View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_low_34 (Length: 297)
Name: NF18786_low_34
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_34 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 1284536 - 1284813
Alignment:
| Q |
1 |
gctgcatgggaaaattctaccatatgcccactataacaaatccagccatcatattacattaattatatactaatat-aataatttgcaatgagcaatagg |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
1284536 |
gctgcatgggaaaattctaccatatgcccactatgacaaatccagccatcatattacattaattatatactaatattaataatttgcaatgagcaatagg |
1284635 |
T |
|
| Q |
100 |
gtggctagctaatgttaataatcatttatttagtttataatgagggtttatgctcgtgtacatatagaaatggagctcttttttaaagatttgggggttg |
199 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1284636 |
gtggctagctaatgttaataaacatttatttagtttataatgagggtttatgctcgtatacatatagaaatggagctcttttttaaagatttgggggttg |
1284735 |
T |
|
| Q |
200 |
aacaaatatttgtgatttatcattattcagtagttttgtgatcattactagtttactagtgagtgtaaggcggctgcatg |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1284736 |
aacaaatatttgtgatttatcattattcagtagttttgtgatcattactagtttacta--gagtgtaaggcggctgcatg |
1284813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University