View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_35 (Length: 293)
Name: NF18786_low_35
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_35 |
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Alignment Details
Target: chr3 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 13 - 278
Target Start/End: Original strand, 52645048 - 52645314
Alignment:
| Q |
13 |
tcaattagcaacgtcatttatttggtatcattaccatacccaacggttctcttctccccaagtaaaagtgcaaccnnnnnnnnnnnnnnnncaatttgca |
112 |
Q |
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| T |
52645048 |
tcaattagcaacgtcatttatttggtatcattaccatacccaacggttctcttctccccaagtaaaagtgcaaccaaaaataaaagaaaaacaatttgca |
52645147 |
T |
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| Q |
113 |
ttctgacacaaacaattaaataaggtatctactagacaagttcatgtgtggtgtgaaaatggaaaatcagttaataacagcaacatcatcataatactca |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
52645148 |
ttctgacacaaacaattaaataaggtatctactagacaagttcatgtgtggtgtgaaaatggaaaatcagttaataacagtaacatcatcataatactca |
52645247 |
T |
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| Q |
213 |
ccattcc-nnnnnnnaaagagacatgaacgctacttcagtttcaaagctactccttgtagtagttac |
278 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52645248 |
ccattccttttctttaaagagacatgaacgctacttcagtttcaaagctactccttgtagtagttac |
52645314 |
T |
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