View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_41 (Length: 261)

Name: NF18786_low_41
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_41
NF18786_low_41
[»] chr5 (7 HSPs)
chr5 (1-245)||(5664562-5664806)
chr5 (144-245)||(5662954-5663055)
chr5 (4-105)||(5663632-5663733)
chr5 (141-200)||(15063360-15063419)
chr5 (1-39)||(5048111-5048149)
chr5 (1-57)||(5046569-5046625)
chr5 (1-57)||(5047340-5047396)
[»] chr4 (5 HSPs)
chr4 (1-232)||(28787124-28787355)
chr4 (141-232)||(6824788-6824879)
chr4 (1-215)||(24853459-24853671)
chr4 (1-59)||(24856350-24856408)
chr4 (1-54)||(51246735-51246788)
[»] scaffold0406 (1 HSPs)
scaffold0406 (1-74)||(6393-6466)


Alignment Details
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 5664806 - 5664562
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttc 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  5664806 atcatattctctcctcctacaataaattaattaccaatgtgtgccttcttgtccaatgccacataccactctacaacttgcttccacactatatattttc 5664707  T
Q  101 taacagttctatcaaagccatgttcggttattcactagcatagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcct 200  Q
    |||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5664706 taacagttctatcagagccatgttcggttattcactagcgtagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcct 5664607  T
Q  201 actaaattagaaaatccagtctacgactcaaacaaaagtagtata 245  Q
    |||||| |||||||| |||||||||||||| ||||||||| ||||    
T  5664606 actaaactagaaaattcagtctacgactcagacaaaagtaatata 5664562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 144 - 245
Target Start/End: Complemental strand, 5663055 - 5662954
Alignment:
Q  144 caaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaattagaaaatccagtctacgactcaaacaaaagtagta 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  5663055 caaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaactagaaaatccagtctacgactcagacaaaagtagta 5662956  T
Q  244 ta 245  Q
    ||    
T  5662955 ta 5662954  T

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Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 105
Target Start/End: Complemental strand, 5663733 - 5663632
Alignment:
Q  4 atattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttctaa 103  Q
    |||||||||||| ||||||| | ||| ||| ||||||||| ||||||||||||||| ||  |||| | ||| |||||| |||||| ||||||||||||||    
T  5663733 atattctctccttctacaatgagctatttatcaatgtgtgtcttcttgtccaatgctactaaccattgtaccactagcacccacaatatatattttctaa 5663634  T
Q  104 ca 105  Q
    ||    
T  5663633 ca 5663632  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 200
Target Start/End: Original strand, 15063360 - 15063419
Alignment:
Q  141 tagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcct 200  Q
    ||||||||||||||||| |||||||||||||||||||| ||| ||| ||| |||||||||    
T  15063360 tagcaaaatatgacctcttgtcaccaactatatattctacaacatgtattctactatcct 15063419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 5048111 - 5048149
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatg 39  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  5048111 atcatattctctcctcctacaataaactacttaccaatg 5048149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5046569 - 5046625
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaat 57  Q
    ||||||||||||||||||||||| | ||| ||||||||| ||| | | |||||||||    
T  5046569 atcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5046625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5047340 - 5047396
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaat 57  Q
    ||||||||||||||||||||||| | ||| ||||||||| ||| | | |||||||||    
T  5047340 atcatattctctcctcctacaatgagctacttaccaatgcgtgtccttttgtccaat 5047396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 5e-31; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 28787124 - 28787355
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttc 100  Q
    |||||||| |||||||||| ||| |  ||||||| |||||||| | |||||| |||||| ||  |||||||||| | ||||||| ||||||||| |||||    
T  28787124 atcatattatctcctcctataatgaggtaattactaatgtgtgtcctcttgttcaatgctactaaccactctaccattagctcctacactatattttttc 28787223  T
Q  101 taacagttctatcaaagccatgttcggttattcactag-catagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcc 199  Q
     ||||||  ||||| ||    ||||| | ||| ||| | | || |||||||||| |||||||||||||||||||||||| ||| ||||||| ||||||||    
T  28787224 -aacagtggtatcagagatgcgttcgatcattaactgggcgtaacaaaatatgatctcgtgtcaccaactatatattctacaacatgaattctactatcc 28787322  T
Q  200 tactaaattagaaaatccagtctacgactcaaa 232  Q
    ||||||| |||||||| ||| ||| ||||||||    
T  28787323 tactaaactagaaaattcagcctatgactcaaa 28787355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 141 - 232
Target Start/End: Complemental strand, 6824879 - 6824788
Alignment:
Q  141 tagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcctactaaattagaaaatccagtctacgactcaaa 232  Q
    |||||||||||||||| ||||||||||||||||||||| ||| ||||||| ||||||||||| ||| |||||||||||| ||| | ||||||    
T  6824879 tagcaaaatatgaccttgtgtcaccaactatatattctacaacatgaattctactatcctaccaaactagaaaatccagcctatggctcaaa 6824788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 24853459 - 24853671
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgccacataccactctacaactagctcccacactatatattttc 100  Q
    |||||||||| |||||||||||| | |||||||||||| |||| | ||||||||||||| ||  | ||||| || ||||||||| ||||||||| |||||    
T  24853459 atcatattctttcctcctacaatgagctaattaccaatatgtgtcctcttgtccaatgctactaaacactccaccactagctcctacactatat-ttttc 24853557  T
Q  101 taacagttctatcaaagccatgttcggttattcacta-gcatagcaaaatatgacctcgtgtcaccaactatatattctgcaatatgaattttactatcc 199  Q
    ||||| |  ||||| |    |||||| | ||| |||| || | ||||||||| ||||| ||||||||||  ||| |||  ||| ||||||| ||||||||    
T  24853558 taacattggtatcagatttgtgttcgatcattaactaggcgtcgcaaaatataacctcatgtcaccaac--tattttccacaacatgaattctactatcc 24853655  T
Q  200 tactaaattagaaaat 215  Q
    ||| ||| ||||||||    
T  24853656 taccaaactagaaaat 24853671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24856350 - 24856408
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgc 59  Q
    ||||||||||||||||||||||| | |||||||||||| |||| | |||||||||||||    
T  24856350 atcatattctctcctcctacaatgagctaattaccaatatgtgtcatcttgtccaatgc 24856408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 51246735 - 51246788
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtcc 54  Q
    ||||||||||||||||||||||| | |||||| | |||||||| | ||||||||    
T  51246735 atcatattctctcctcctacaatgagctaattcctaatgtgtgtcctcttgtcc 51246788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 6393 - 6466
Alignment:
Q  1 atcatattctctcctcctacaataaactaattaccaatgtgtgccttcttgtccaatgccacataccactctac 74  Q
    |||||||| |||||||||| ||| | |||||| | |||||||| | ||||||||||||| ||  ||||||||||    
T  6393 atcatattatctcctcctataatgagctaattcctaatgtgtgtcatcttgtccaatgctactaaccactctac 6466  T

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