View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_42 (Length: 260)
Name: NF18786_low_42
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 9 - 241
Target Start/End: Original strand, 18983781 - 18984013
Alignment:
| Q |
9 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18983781 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcagatcgcttaaggtggagtttgatgaaagtagggtcagatatgagagtcttccatgacttgg |
18983880 |
T |
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| Q |
109 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccagcccgtgactcaacttgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18983881 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccagcccgtgactcaacttgatg |
18983980 |
T |
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| Q |
209 |
ggaattcatcagagctttgctgctggaactgga |
241 |
Q |
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| T |
18983981 |
ggaattcatcagagctttgctgctggaactgga |
18984013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 18953734 - 18953961
Alignment:
| Q |
9 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttgg |
108 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
18953734 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcagatcgattaaggtggagtttgacgaaagtaggatcagatatgagagtcttccatgacttgg |
18953833 |
T |
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| Q |
109 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccagcccgtgactcaacttgatg |
208 |
Q |
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| T |
18953834 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccagcccgtgactcaacttgatg |
18953933 |
T |
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| Q |
209 |
ggaattcatcagagctttgctgctggaa |
236 |
Q |
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| T |
18953934 |
ggaattcatcagagctttgctgctggaa |
18953961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 18988583 - 18988810
Alignment:
| Q |
9 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18988583 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcagatcgcttaaggtggagtttgatgaaagtagggtcagatatgagagtcttccatgacttgg |
18988682 |
T |
|
| Q |
109 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccagcccgtgactcaacttgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18988683 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccagcccgtgactcaacttgatg |
18988782 |
T |
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| Q |
209 |
ggaattcatcagagctttgctgctggaa |
236 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
18988783 |
ggaattcatcagagctttgctgctggaa |
18988810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 236
Target Start/End: Original strand, 18998427 - 18998644
Alignment:
| Q |
9 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttgg |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
18998427 |
acatcatcataaattaatgtaaggtgtgtgtttcttgcag----------gtggagtttgatgaaagtagggtcagatatgagagtcttccatgacttgg |
18998516 |
T |
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| Q |
109 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtaaaggactccagcccgtgactcaacttgatg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
18998517 |
agacgcacttgaatcgcgtaagagacttcacgtcaaggaatgataggatttcttcgataaggtcattgtagaggactccagcccgtgactcaacttgatg |
18998616 |
T |
|
| Q |
209 |
ggaattcatcagagctttgctgctggaa |
236 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
18998617 |
ggaattcatcagagctttgctgctggaa |
18998644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 174
Target Start/End: Original strand, 19598530 - 19598672
Alignment:
| Q |
32 |
gtgtgtgtttcttgcagatcgattaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaaga |
131 |
Q |
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|||| |||||||||||||| | || ||||| ||||||| ||||| |||| ||| || || || |||||||||||| ||||||| |||||| || |||| |
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| T |
19598530 |
gtgtttgtttcttgcagattgcttgaggtgtagtttgacaaaagtgggatgagagattagggttttccatgacttgcagacgcatttgaattgcacaaga |
19598629 |
T |
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| Q |
132 |
gacttcacgtcaaggaatgataggatttcttcgataaggtcat |
174 |
Q |
| |
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|| || || |||||||||||||||||| ||||||| |||| |
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| T |
19598630 |
gaatttacaggaaggaatgataggatttcaacgataagttcat |
19598672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Original strand, 19610198 - 19610266
Alignment:
| Q |
71 |
gaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgcgtaagagacttcac |
139 |
Q |
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|||||| ||||| |||||||||| |||||||||||| |||||||||| |||||| | ||||| ||||| |
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| T |
19610198 |
gaaagtgggatcggatatgagagctttccatgacttgcagacgcacttaaatcgcatcagagatttcac |
19610266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 54 - 125
Target Start/End: Complemental strand, 36339365 - 36339294
Alignment:
| Q |
54 |
ttaaggtggagtttgatgaaagtaggatcagatatgagagtcttccatgacttggagacgcacttgaatcgc |
125 |
Q |
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|||||||| | |||||||||||| ||||| || |||||||| |||||||||||| || |||||||||||| |
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| T |
36339365 |
ttaaggtgcattttgatgaaagttggatctgagatgagagtgttccatgacttgctcacacacttgaatcgc |
36339294 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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