View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_44 (Length: 255)

Name: NF18786_low_44
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_44
NF18786_low_44
[»] chr3 (27 HSPs)
chr3 (75-239)||(10430914-10431078)
chr3 (46-239)||(10035035-10035228)
chr3 (46-239)||(10520517-10520710)
chr3 (46-239)||(9980498-9980691)
chr3 (46-239)||(9852909-9853102)
chr3 (46-239)||(9841890-9842083)
chr3 (64-239)||(10666567-10666742)
chr3 (46-184)||(10263788-10263926)
chr3 (62-239)||(10129954-10130125)
chr3 (60-239)||(10360658-10360838)
chr3 (74-239)||(11772266-11772430)
chr3 (46-239)||(10583614-10583808)
chr3 (74-239)||(11778855-11779019)
chr3 (60-239)||(10372768-10372948)
chr3 (62-184)||(10531868-10531989)
chr3 (64-239)||(10503683-10503857)
chr3 (120-184)||(10092082-10092146)
chr3 (120-184)||(10198964-10199028)
chr3 (119-184)||(10680666-10680731)
chr3 (129-215)||(11242500-11242586)
chr3 (92-181)||(10086265-10086354)
chr3 (92-181)||(10193185-10193274)
chr3 (7-48)||(9980724-9980765)
chr3 (7-48)||(10035261-10035302)
chr3 (7-48)||(10130173-10130214)
chr3 (7-48)||(10263959-10264000)
chr3 (7-48)||(10430718-10430759)
[»] scaffold0083 (2 HSPs)
scaffold0083 (46-239)||(54446-54639)
scaffold0083 (7-48)||(54372-54413)
[»] chr2 (1 HSPs)
chr2 (94-184)||(26909975-26910065)
[»] chr4 (1 HSPs)
chr4 (119-238)||(17849840-17849959)
[»] chr8 (1 HSPs)
chr8 (134-176)||(44954592-44954634)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 75 - 239
Target Start/End: Original strand, 10430914 - 10431078
Alignment:
Q  75 ggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttctt 174  Q
    |||||||||||||||||||||||||||||||| ||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10430914 ggaacacaacttgtctatcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttctt 10431013  T
Q  175 ctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10431014 ctaacaatggacattccctaattctcagttgcttaagagagtcagggaggctgtcttctggtaat 10431078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 10035228 - 10035035
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||||||||||||||||||    
T  10035228 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttgga 10035129  T
Q  146 ccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||||||||||||||||||||||||||||||| || | || ||| |  |||||| |||||||||||| |||||||||||||||||||    
T  10035128 ccaatgttccttccttttatacctttcttctaacaatgggcaattccaaatgcagagttccctaagagagtcagtgaggctgtcttctggtaat 10035035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 10520710 - 10520517
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||  ||||||  ||||||||||||||||||||    
T  10520710 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttggtaatttattgatatgactgggatgtgagcaattttgga 10520611  T
Q  146 ccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||   ||||  ||| ||||||||||||||||||||||||||||||    
T  10520610 ccaatgttccttccttttatacctttcttctaacaatggacattcccaaatgagcagtctcttcagagagtcagggaggctgtcttctggtaat 10520517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 9980691 - 9980498
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||  |||||| |||||||||||||||||||||    
T  9980691 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttgga 9980592  T
Q  146 ccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||||||||||||||||||||||||||||||| ||  |    ||   ||||||||||||||| ||||||||||||||||||||||||    
T  9980591 ccaatgttccttccttttatacctttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaat 9980498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 9853102 - 9852909
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |  ||||| || | ||||| |||||||||||||||||||||    
T  9853102 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtaacctggtcatttatttctatgacagggatgtgagcaattttgga 9853003  T
Q  146 ccaatgttccttccttttatacctttcttctaacaatggacattccctaattct-cagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||| | | ||||  ||| || |||||||||||||||||||||||||||    
T  9853002 ccaatgttccttccttttatacctttcttctaacaatggaca-tccataaatgtccagtctcttcagtgagtcagggaggctgtcttctggtaat 9852909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 9842083 - 9841890
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 145  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||  |  || ||  |||||| |||||||||||||||||||||    
T  9842083 ggtaggaactgtggaacatacctgaaacgggaacacaacttgtctatcatattctgacttggtggtttatccatatgacagggatgtgagcaattttgga 9841984  T
Q  146 ccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
     |||||||||||||||||||||||||||||||||||||||||| ||| |||  ||||   || |||||||||||||||||||||||||||||||    
T  9841983 gcaatgttccttccttttatacctttcttctaacaatggacatccccaaatgttcagacgctcaagagagtcagggaggctgtcttctggtaat 9841890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 10666742 - 10666567
Alignment:
Q  64 tacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcctttt 163  Q
    |||||||||  ||||||||||| |||||||||||||||||||  | ||| ||  |||||| |||||||||||||||||||||||||||||||||||||||    
T  10666742 tacctgaaacaggaacacaactcgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttcctttt 10666643  T
Q  164 atacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||||||||||||||||||||  |||   ||||||||||||||||||||||||||||||||||||||||    
T  10666642 atacctttcttctaacaatggacattcctcaatgtgcagttccttaagagagtcagggaggctgtcttctggtaat 10666567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 46 - 184
Target Start/End: Complemental strand, 10263926 - 10263788
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||   |||||||||||||||||||||||||||    
T  10263926 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttgga 10263827  T
Q  146 ccaatgttccttccttttatacctttcttctaacaatgg 184  Q
    | |||||||||||||||||||||||||||||||||||||    
T  10263826 ctaatgttccttccttttatacctttcttctaacaatgg 10263788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 62 - 239
Target Start/End: Complemental strand, 10130125 - 10129954
Alignment:
Q  62 catacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcctt 161  Q
    |||||||||||||||||||||||||||||||||||||||| |||      |||||| | ||||||||||||||||||||||||| |||||||||||||||    
T  10130125 catacctgaaatgggaacacaacttgtctatcatattgtgcctt------tgatatttttgaaagggatgtgagcaattttggagcaatgttccttcctt 10130032  T
Q  162 ttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||||||||||||||||||| |   ||| | ||||| | ||||||| ||||||||||||||||||||||||    
T  10130031 ttatacctttcttctaacaatggacatccttgaatgcacagttgcataagagaatcagggaggctgtcttctggtaat 10129954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 10360658 - 10360838
Alignment:
Q  60 aacatacctgaaat-gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttc 158  Q
    |||||||||||||  ||||||||||||||||||||||||||||||||  || || || | |||||  |||||||||||||||||||| ||||||||||||    
T  10360658 aacatacctgaaaacgggaacacaacttgtctatcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttccttc 10360757  T
Q  159 cttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    |||||||||||||||||||||||||| || ||    ||   ||||||||||||||||||||||||||||||||||||||||    
T  10360758 cttttatacctttcttctaacaatgggcaatcatagatgtccagttccttaagagagtcagggaggctgtcttctggtaat 10360838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 74 - 239
Target Start/End: Complemental strand, 11772430 - 11772266
Alignment:
Q  74 gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttct 173  Q
    ||||||||| ||||| | |||||||||||||| |||||| |||| ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  11772430 gggaacacagcttgt-tctcatattgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 11772332  T
Q  174 tctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||| ||| ||| |||  |||||| |||||||||||| |||||||||||||| ||||||    
T  11772331 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaat 11772266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 46 - 239
Target Start/End: Complemental strand, 10583808 - 10583614
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaat-gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgg 144  Q
    |||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||  | ||| || | ||||| ||||||||||||||||||||    
T  10583808 ggtaggaaatgtggaacatacctgaaaacgggaacacaacttgtctatcatattgtgactttgtgatttatttgtatgacagggatgtgagcaattttgg 10583709  T
Q  145 accaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    |||||| ||| ||||||||||||||||||||||||||||| ||       ||  |||||  || |||||||||||||||||||||||||||||||    
T  10583708 accaatattcattccttttatacctttcttctaacaatgggcaaaattggatggtcagtcgctcaagagagtcagggaggctgtcttctggtaat 10583614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 74 - 239
Target Start/End: Original strand, 11778855 - 11779019
Alignment:
Q  74 gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttct 173  Q
    ||||||||| ||||| | |||||||||||||| |||||| || | ||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||    
T  11778855 gggaacacagcttgt-tctcatattgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttct 11778953  T
Q  174 tctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||| ||| ||| |||  |||||| |||||||||||| |||||||||||||| ||||||    
T  11778954 tctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaat 11779019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 10372768 - 10372948
Alignment:
Q  60 aacatacctgaaat-gggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttc 158  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||  || || || | |||||  |||||||||||||||||||||||||||||||||    
T  10372768 aacatacctgaaaacgggaacacaacttgtctatcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttccttc 10372867  T
Q  159 cttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    |||||||||||||||||||||||||| ||| || ||||   ||||  ||| ||||||  ||||||||||||||||||||||    
T  10372868 cttttatacctttcttctaacaatgggcatcccataatgaccagtctcttcagagaggaagggaggctgtcttctggtaat 10372948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 10531989 - 10531868
Alignment:
Q  62 catacctgaaatgggaacacaacttgtctatcatattgtgactt-cttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcct 160  Q
    ||||||||||| ||||||||||||||||| ||||||||| |||| |||  ||  ||| ||||| ||||||||||| |||||||||||||| |||||||||    
T  10531989 catacctgaaacgggaacacaacttgtct-tcatattgtaacttgcttgtttattat-tatgacagggatgtgagaaattttggaccaattttccttcct 10531892  T
Q  161 tttatacctttcttctaacaatgg 184  Q
    ||||||||||||||||||||||||    
T  10531891 tttatacctttcttctaacaatgg 10531868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 64 - 239
Target Start/End: Complemental strand, 10503857 - 10503683
Alignment:
Q  64 tacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttcctttt 163  Q
    ||||||||| ||||||||| | ||||  |||||||||||||| | |||  || | ||||| ||||||||||| |||||||||||||||||||||||||||    
T  10503857 tacctgaaacgggaacacagcctgtcc-tcatattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttcctttt 10503759  T
Q  164 atacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    |||||||||||||||   ||| |||     |||  |||||  ||||||||| ||||| ||||||||||||||||||    
T  10503758 atacctttcttctaatgttgggcatctttgaatgatcagtagcttaagagaatcaggaaggctgtcttctggtaat 10503683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 10092146 - 10092082
Alignment:
Q  120 atgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 184  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10092146 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgg 10092082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 120 - 184
Target Start/End: Complemental strand, 10199028 - 10198964
Alignment:
Q  120 atgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 184  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10199028 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgg 10198964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 10680731 - 10680666
Alignment:
Q  119 tatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 184  Q
    ||||| ||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  10680731 tatgacagggatgtgagaaattttggaccgatgttcattccttttatacctttcttctaacaatgg 10680666  T

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Target: chr3; HSP #20
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 129 - 215
Target Start/End: Original strand, 11242500 - 11242586
Alignment:
Q  129 atgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagag 215  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||||||||||  || |||||| |||| |||||| |||||||||||    
T  11242500 atgtgagctattttggaccaatgttcctgcttttgatacctttcttctaacacagggcattccttaatgctcagtaccttaagagag 11242586  T

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Target: chr3; HSP #21
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 10086354 - 10086265
Alignment:
Q  92 tcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaa 181  Q
    ||||||||||| |||  |||| || | ||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  10086354 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaa 10086265  T

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Target: chr3; HSP #22
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 181
Target Start/End: Complemental strand, 10193274 - 10193185
Alignment:
Q  92 tcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaa 181  Q
    ||||||||||| |||  |||| || | ||||| ||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  10193274 tcatattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaa 10193185  T

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Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 9980765 - 9980724
Alignment:
Q  7 gtagcataggacccatgagatgatatgaaaatattaagaggt 48  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  9980765 gtagcagaggacccatgagatgatatgaaaatattaagaggt 9980724  T

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Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 10035302 - 10035261
Alignment:
Q  7 gtagcataggacccatgagatgatatgaaaatattaagaggt 48  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  10035302 gtagcagaggacccatgagatgatatgaaaatattaagaggt 10035261  T

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Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 10130214 - 10130173
Alignment:
Q  7 gtagcataggacccatgagatgatatgaaaatattaagaggt 48  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  10130214 gtagcagaggacccatgagatgatatgaaaatattaagaggt 10130173  T

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Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Complemental strand, 10264000 - 10263959
Alignment:
Q  7 gtagcataggacccatgagatgatatgaaaatattaagaggt 48  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  10264000 gtagcagaggacccatgagatgatatgaaaatattaagaggt 10263959  T

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Target: chr3; HSP #27
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 10430718 - 10430759
Alignment:
Q  7 gtagcataggacccatgagatgatatgaaaatattaagaggt 48  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  10430718 gtagcagaggacccatgagatgatatgaaaatattaagaggt 10430759  T

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Target: scaffold0083 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 46 - 239
Target Start/End: Original strand, 54446 - 54639
Alignment:
Q  46 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgacttcttcattgatatatatgaaagggatgtgagcaattttgga 145  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||| ||  |||||| |||||||||||||||||||||    
T  54446 ggtaggaactgtggaacatacctgaaatgggaacacaacttgtctatcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttgga 54545  T
Q  146 ccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 239  Q
    ||||||||||||||||||||||||||||||||||||||| ||  |    ||   ||||||||||||||| ||||||||||||||||||||||||    
T  54546 ccaatgttccttccttttatacctttcttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaat 54639  T

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Target: scaffold0083; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 48
Target Start/End: Original strand, 54372 - 54413
Alignment:
Q  7 gtagcataggacccatgagatgatatgaaaatattaagaggt 48  Q
    |||||| |||||||||||||||||||||||||||||||||||    
T  54372 gtagcagaggacccatgagatgatatgaaaatattaagaggt 54413  T

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Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 94 - 184
Target Start/End: Complemental strand, 26910065 - 26909975
Alignment:
Q  94 atattgtgacttcttcattgatatatatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 184  Q
    ||||| |||||| || ||| || | ||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26910065 atattatgacttgttgatttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttgtacctttcttctaacaatgg 26909975  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 119 - 238
Target Start/End: Original strand, 17849840 - 17849959
Alignment:
Q  119 tatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtca 218  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  || |||  || |||   ||||  ||||||||||  |    
T  17849840 tatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaatatagggcatcgccaaatgaccagtcgcttaagagaggaa 17849939  T
Q  219 gggaggctgtcttctggtaa 238  Q
    ||||||||||||||||||||    
T  17849940 gggaggctgtcttctggtaa 17849959  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 44954592 - 44954634
Alignment:
Q  134 agcaattttggaccaatgttccttccttttatacctttcttct 176  Q
    |||||||||||||||||||||||||||| ||||||||||||||    
T  44954592 agcaattttggaccaatgttccttccttctatacctttcttct 44954634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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