View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_45 (Length: 252)

Name: NF18786_low_45
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_45
NF18786_low_45
[»] chr3 (4 HSPs)
chr3 (58-171)||(25889768-25889881)
chr3 (2-58)||(25889642-25889698)
chr3 (80-198)||(25907129-25907247)
chr3 (1-58)||(31141421-31141478)
[»] chr4 (2 HSPs)
chr4 (1-58)||(27272588-27272645)
chr4 (1-53)||(53469713-53469765)
[»] chr7 (1 HSPs)
chr7 (1-58)||(7961794-7961851)
[»] chr6 (6 HSPs)
chr6 (1-58)||(13556059-13556116)
chr6 (7-56)||(2923215-2923264)
chr6 (1-58)||(13558030-13558087)
chr6 (1-51)||(11677139-11677189)
chr6 (1-51)||(11678857-11678907)
chr6 (13-58)||(2921897-2921942)
[»] chr2 (2 HSPs)
chr2 (12-58)||(8761227-8761273)
chr2 (13-58)||(10128530-10128575)
[»] chr1 (3 HSPs)
chr1 (1-58)||(22827082-22827139)
chr1 (1-58)||(22840986-22841043)
chr1 (4-58)||(22826687-22826741)
[»] chr8 (1 HSPs)
chr8 (148-223)||(98619-98692)
[»] chr5 (2 HSPs)
chr5 (1-56)||(32796351-32796406)
chr5 (1-58)||(19670687-19670744)


Alignment Details
Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 58 - 171
Target Start/End: Original strand, 25889768 - 25889881
Alignment:
Q  58 atacaatttctttctttctgttcttagattccataatttcttctgctcattgtttagataaaggaataatgaaacaatgagcgggtgaaatatggaatcc 157  Q
    |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |||  |||||||||||| ||| |||||||||||    
T  25889768 atacaattcctttctttctgttcttagattccataatttcttccgctcattgtttagttaaaggaagaatccaacaatgagcggttgagatatggaatcc 25889867  T
Q  158 gagaccgagaaagc 171  Q
    ||| ||||| ||||    
T  25889868 gaggccgaggaagc 25889881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 25889642 - 25889698
Alignment:
Q  2 tatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  25889642 tatgcaaaggtttggtcatataaataaaagtcttgtatgttagtatttcttgcacca 25889698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 80 - 198
Target Start/End: Original strand, 25907129 - 25907247
Alignment:
Q  80 cttagattccataatttcttctgctcattgtttagataaaggaataatgaaacaatgagcgggtgaa-atatggaatccgagaccgagaaagccagctaa 178  Q
    |||||||||||||| |||  | |||||||||| ||||||||||| ||| ||||||||||||||||||  ||||||||| ||| ||| | |||| |||| |    
T  25907129 cttagattccataacttcacccgctcattgttcagataaaggaagaatcaaacaatgagcgggtgaagttatggaatctgaggccggggaagctagct-a 25907227  T
Q  179 gaaggaagagaagcagagcg 198  Q
    ||||||||||||||||||||    
T  25907228 gaaggaagagaagcagagcg 25907247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 31141421 - 31141478
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    |||||||||| ||| | |||||||||||||||||||   ||||||||||||| |||||    
T  31141421 atatgcaaagatttagccatataaataaaagtcttgcgtgttagtatttcttacacca 31141478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 27272588 - 27272645
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
T  27272588 atatgcaaaggtttggtcatataaataaaagtcttgtgtgttagtatttcttgcacca 27272645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 53469765 - 53469713
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttg 53  Q
    ||||||||||  |||||||||||||||||||||||||  ||||||||||||||    
T  53469765 atatgcaaagacttggtcatataaataaaagtcttgtgtgttagtatttcttg 53469713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 7961794 - 7961851
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||||||||||||||||||||||| |||||  |||||||||||||||||||    
T  7961794 atatgcaaaggtttggtcatataaataaaagccttgtgtgttagtatttcttgcacca 7961851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13556116 - 13556059
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||    
T  13556116 atatgcaaaggcttggtcatataaataaaagccttgtgtgttagtatttcttgcacca 13556059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 7 - 56
Target Start/End: Complemental strand, 2923264 - 2923215
Alignment:
Q  7 aaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcac 56  Q
    ||||| |||||||||||||||||||||||||  ||||||| |||||||||    
T  2923264 aaaggcttggtcatataaataaaagtcttgtgtgttagtacttcttgcac 2923215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 13558087 - 13558030
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||| |||||||||||||||||||  ||||  ||||||||||| |||||||    
T  13558087 atatgcaaaggcttggtcatataaataaaagcattgtgtgttagtatttcatgcacca 13558030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11677139 - 11677189
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttct 51  Q
    ||||||||||| ||| |||||||||||||| ||||||  ||||||||||||    
T  11677139 atatgcaaaggattgatcatataaataaaactcttgtgtgttagtatttct 11677189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 11678857 - 11678907
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttct 51  Q
    ||||||||||| |||||||| ||||||||| ||||||  ||||||||||||    
T  11678857 atatgcaaaggcttggtcatgtaaataaaactcttgtgtgttagtatttct 11678907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 13 - 58
Target Start/End: Complemental strand, 2921942 - 2921897
Alignment:
Q  13 ttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||| ||||||||||||||||| |  |||||||||||||||||||    
T  2921942 ttggtaatataaataaaagtcttatgtgttagtatttcttgcacca 2921897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Complemental strand, 8761273 - 8761227
Alignment:
Q  12 tttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||    
T  8761273 tttggtcatataaataaaagtcttgtgtgttagtatttcttgcacca 8761227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 10128530 - 10128575
Alignment:
Q  13 ttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    |||||||||||||||||||||||||  |||||||||||||||||||    
T  10128530 ttggtcatataaataaaagtcttgtgtgttagtatttcttgcacca 10128575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 22827139 - 22827082
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||||||||||||||||||||||| |||||  |||  ||||||||||||||    
T  22827139 atatgcaaaggtttggtcatataaataaaagccttgtgtgttcatatttcttgcacca 22827082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22840986 - 22841043
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||| ||||||||| ||||||||| |||||  |||||||||||||||||||    
T  22840986 atatgcaaaggcttggtcataaaaataaaagccttgtgtgttagtatttcttgcacca 22841043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 22826741 - 22826687
Alignment:
Q  4 tgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    |||||||| ||||||||||||||||||| ||| |  |||||||||||||||||||    
T  22826741 tgcaaaggcttggtcatataaataaaagccttatgtgttagtatttcttgcacca 22826687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 223
Target Start/End: Original strand, 98619 - 98692
Alignment:
Q  148 tatggaatccgagaccgagaaagccagctaagaaggaagagaagcagagcgcggcggtggcggaagttcgaggaag 223  Q
    ||||||||| ||| ||||| |||||| | ||||||||||||||| |||  |||||||||| |||||||||||||||    
T  98619 tatggaatctgaggccgaggaagccaaccaagaaggaagagaagaaga--gcggcggtggaggaagttcgaggaag 98692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 32796406 - 32796351
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcac 56  Q
    ||||||||||| || |||||||||||||||| |||||  ||||||||| |||||||    
T  32796406 atatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattccttgcac 32796351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 19670687 - 19670744
Alignment:
Q  1 atatgcaaaggtttggtcatataaataaaagtcttgtacgttagtatttcttgcacca 58  Q
    ||||||||||| || |||||||||||||||| |||||  ||||||||| |||| ||||    
T  19670687 atatgcaaaggcttagtcatataaataaaagccttgtgtgttagtattacttgtacca 19670744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University