View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_46 (Length: 251)
Name: NF18786_low_46
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_46 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 73 - 251
Target Start/End: Complemental strand, 47320175 - 47319991
Alignment:
| Q |
73 |
agatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttctcttcatctttgagtgccgct------tcatcaact |
166 |
Q |
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| T |
47320175 |
agatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttctcttcatctttgagtgccgctgccgcttcatcaact |
47320076 |
T |
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| Q |
167 |
tgaagttcatatttcaactctaatccatcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggca |
251 |
Q |
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| T |
47320075 |
tgaagttcatatttcaactctaatccatcatcaccttgttgttcatcaccatccaatggaagtgagattttgtgtccctctggca |
47319991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 173 - 251
Target Start/End: Complemental strand, 47316605 - 47316526
Alignment:
| Q |
173 |
tcatatttcaactctaatccatcatcaccttgttgttc-atcaccatccaatggaagtgagattttgtgtccctctggca |
251 |
Q |
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| T |
47316605 |
tcatctttcaactctaatccatcatcaccttgttgttctatcaccatccaatgaaagtgagattttgtgtccctctggca |
47316526 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 47320222 - 47320180
Alignment:
| Q |
47 |
tactgtgaaattgacacataacagatagatcaaactaggaatt |
89 |
Q |
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| T |
47320222 |
tactgtgaaattgacacataacagatagatcaaactaggaatt |
47320180 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 136
Target Start/End: Complemental strand, 47316662 - 47316597
Alignment:
| Q |
71 |
atagatcaaactaggaattgctacatgcaggattgtagtcaaacttgttattgttcgtcatctttc |
136 |
Q |
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| T |
47316662 |
atagatcaaactaggaatttctatacgcacgattgtaatcaaacttattattgttcatcatctttc |
47316597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 195 - 236
Target Start/End: Complemental strand, 47307166 - 47307125
Alignment:
| Q |
195 |
catcaccttgttgttcatcaccatccaatggaagtgagattt |
236 |
Q |
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| T |
47307166 |
catcacctcgttgttcatcatcatccaatggaagtgagattt |
47307125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 116 - 176
Target Start/End: Complemental strand, 47311332 - 47311272
Alignment:
| Q |
116 |
tgttattgttcgtcatctttctcttcatctttgagtgccgcttcatcaacttgaagttcat |
176 |
Q |
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| T |
47311332 |
tgttattcttcatcatttttctgctcatctttgagtgccactccatcaccttgaagttcat |
47311272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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