View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18786_low_51 (Length: 240)
Name: NF18786_low_51
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_51 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 21626315 - 21626536
Alignment:
| Q |
19 |
ctccgaaccggatagaattacaattcaacctcattgtgtttattttcaattttttaatagttatttattagacatcttgttcaattgtaattaaacaaat |
118 |
Q |
| |
|
|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21626315 |
ctccgaaccggatagaataacaattcgacctcattgtgtttattttcaattttttaatagttatttattagacatcttgttcaattgtaattaaacaaat |
21626414 |
T |
|
| Q |
119 |
tgaatcatgactaagaaagcctcacttgtaggacctcacatcaagtatttaaaacatgggtttgtacannnnnnnngttgtttttctcctttgagcccac |
218 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
21626415 |
tgaatcatgactaaggaagcctcacttgtaggacctcacatcaagtatttaaaacatgggtttgtacattttttttgttgtttttctcctttgagcccac |
21626514 |
T |
|
| Q |
219 |
ttctgaagcactcatcattact |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
21626515 |
ttctgaagcactcatcattact |
21626536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University