View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_55 (Length: 237)
Name: NF18786_low_55
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 47319993 - 47319773
Alignment:
| Q |
1 |
gcaaccaagtgttgattcccaaaagtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgta |
100 |
Q |
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| T |
47319993 |
gcaaccaagtgttgagtcccaaaagtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgta |
47319894 |
T |
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| Q |
101 |
atcaactacgagtttcaagaattcatcatacttttccatcttatctggaaatgcaactttaactgctgttgcaaacgacgttgggaatagaagtgggatt |
200 |
Q |
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| T |
47319893 |
atcaactacgagtttcaagaattcatcatacttttccatcttatatggaaatgcaactttaactgctgttgcaaacgacgttgggaatagaagtgggatt |
47319794 |
T |
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| Q |
201 |
tcatctcctggtggcaagaag |
221 |
Q |
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||||||||||||||||||||| |
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| T |
47319793 |
tcatctcctggtggcaagaag |
47319773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 9 - 170
Target Start/End: Complemental strand, 47316520 - 47316359
Alignment:
| Q |
9 |
gtgttgattcccaaaagtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaacta |
108 |
Q |
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| T |
47316520 |
gtgttgaatcctgaaagtaaatttttatggtctttaaacaactccatcattccttctttgacaactcttacatcaattcttttggcttggtaatcagcta |
47316421 |
T |
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| Q |
109 |
cgagtttcaagaattcatcatacttttccatcttatctggaaatgcaactttaactgctgtt |
170 |
Q |
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| T |
47316420 |
ggagtttcaagaattcattgaacttttccatcttatcttcaaatgtaaccttaacttctgtt |
47316359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 80 - 179
Target Start/End: Complemental strand, 47314700 - 47314599
Alignment:
| Q |
80 |
atcaattcttttggcattgtaatcaactacgagtttcaagaatt--catcatacttttccatcttatctggaaatgcaactttaactgctgttgcaaacg |
177 |
Q |
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||||||||||||||||| ||||| ||||| |||||||| ||||| || ||||||||||| |||||| | |||||||||||||||| |||||| ||| || |
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| T |
47314700 |
atcaattcttttggcatggtaattaactaggagtttcaggaattttcaccatacttttccctcttattttgaaatgcaactttaaccgctgttacaagcg |
47314601 |
T |
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| Q |
178 |
ac |
179 |
Q |
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|| |
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| T |
47314600 |
ac |
47314599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 26 - 146
Target Start/End: Complemental strand, 47319755 - 47319635
Alignment:
| Q |
26 |
taaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaagaattca |
125 |
Q |
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| T |
47319755 |
taaatcttgatgttctttcaacaactccataattccttctttgatgactcttctatcaattcttttggccctgaaatcatgtaggagtttcatgaaatca |
47319656 |
T |
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| Q |
126 |
tcatacttttccatcttatct |
146 |
Q |
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||| |||||||| |||||||| |
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| T |
47319655 |
tcaaacttttccttcttatct |
47319635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 26 - 95
Target Start/End: Complemental strand, 47314506 - 47314437
Alignment:
| Q |
26 |
taaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggca |
95 |
Q |
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| T |
47314506 |
taaatcttgatgctctttaaacaactccataactccttctttgacaactcttttatcaattcttttggca |
47314437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 151
Target Start/End: Complemental strand, 47316250 - 47316120
Alignment:
| Q |
21 |
aaaagtaaatctttatggtctttaaacaactccatcagtccttctttgaaaactctcatatcaattcttttggcattgtaatcaactacgagtttcaaga |
120 |
Q |
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|||| |||||||| ||| ||||| ||||||||| | | ||||||||||| ||||| |||||||||||||||| | |||| || |||||||| || |
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| T |
47316250 |
aaaattaaatcttgatgttctttcaacaactccgtaactccttctttgacgactcttctatcaattcttttggcgccgaaatcttgtaggagtttcacga |
47316151 |
T |
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| Q |
121 |
attcatcatacttttccatcttatctggaaa |
151 |
Q |
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|||| |||||| ||||| |||||||| |||| |
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| T |
47316150 |
attcttcatacatttccctcttatcttgaaa |
47316120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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