View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_58 (Length: 214)

Name: NF18786_low_58
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_58
NF18786_low_58
[»] chr3 (23 HSPs)
chr3 (26-198)||(10430908-10431078)
chr3 (53-198)||(10666567-10666712)
chr3 (32-198)||(11772266-11772429)
chr3 (32-198)||(10035035-10035199)
chr3 (32-198)||(11778856-11779019)
chr3 (32-198)||(10520517-10520681)
chr3 (26-198)||(10360668-10360838)
chr3 (32-198)||(9852909-9853073)
chr3 (78-198)||(9841890-9842010)
chr3 (32-198)||(9980498-9980662)
chr3 (26-198)||(10372778-10372948)
chr3 (84-198)||(10129954-10130068)
chr3 (26-198)||(10583614-10583784)
chr3 (32-143)||(10263788-10263897)
chr3 (53-198)||(10503683-10503828)
chr3 (79-143)||(10092082-10092146)
chr3 (79-143)||(10198964-10199028)
chr3 (78-143)||(10531868-10531933)
chr3 (53-140)||(10086265-10086352)
chr3 (53-140)||(10193185-10193272)
chr3 (78-143)||(10680666-10680731)
chr3 (88-174)||(11242500-11242586)
chr3 (68-115)||(8585531-8585578)
[»] scaffold0083 (1 HSPs)
scaffold0083 (32-198)||(54475-54639)
[»] chr4 (1 HSPs)
chr4 (53-197)||(17849815-17849959)
[»] chr2 (1 HSPs)
chr2 (69-143)||(26909975-26910049)
[»] chr8 (2 HSPs)
chr8 (53-135)||(44954552-44954634)
chr8 (68-106)||(11488217-11488255)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 10430908 - 10431078
Alignment:
Q  26 aaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttata 125  Q
    |||||||||||||||||||| || || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10430908 aaaactggaacacaacttgt-ct-atcatattgtgacttcatcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttata 10431005  T
Q  126 cctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10431006 cctttcttctaacaatggacattccctaattctcagttgcttaagagagtcagggaggctgtcttctggtaat 10431078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 10666712 - 10666567
Alignment:
Q  53 atattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccct 152  Q
    |||||||||||| || ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  10666712 atattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattcctc 10666613  T
Q  153 aattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||   ||||||||||||||||||||||||||||||||||||||||    
T  10666612 aatgtgcagttccttaagagagtcagggaggctgtcttctggtaat 10666567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 11772429 - 11772266
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||| |||||||||||   ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  11772429 ggaacacagcttgttctcat---attgtgactttttcatttatatctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttc 11772333  T
Q  132 ttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||| ||| ||| |||  |||||| |||||||||||| |||||||||||||| ||||||    
T  11772332 ttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaat 11772266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 10035199 - 10035035
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||||||||| || || ||||||||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10035199 ggaacacaacttgt-ct-atcatattgtgacttcatgatttatatctatgaaagggatgtgagcaattttggaccaatgttccttccttttatacctttc 10035102  T
Q  132 ttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||| || | || ||| |  |||||| |||||||||||| |||||||||||||||||||    
T  10035101 ttctaacaatgggcaattccaaatgcagagttccctaagagagtcagtgaggctgtcttctggtaat 10035035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 11778856 - 11779019
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||| |||||||||||   ||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||    
T  11778856 ggaacacagcttgttctcat---attgtgactttttcatttatttctatgacagggatgtgagcgattttggaccaatgttctttccttttatacctttc 11778952  T
Q  132 ttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||| ||| ||| |||  |||||| |||||||||||| |||||||||||||| ||||||    
T  11778953 ttctaacaatgggcatccccaaatggtcagttgcttaagagagtcggggaggctgtcttccggtaat 11779019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 10520681 - 10520517
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||||||||| || || |||||||||||| || ||||||   |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10520681 ggaacacaacttgt-ct-atcatattgtgacttggtaatttattgatatgactgggatgtgagcaattttggaccaatgttccttccttttatacctttc 10520584  T
Q  132 ttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||||||||||| |||   ||||  ||| ||||||||||||||||||||||||||||||    
T  10520583 ttctaacaatggacattcccaaatgagcagtctcttcagagagtcagggaggctgtcttctggtaat 10520517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 10360668 - 10360838
Alignment:
Q  26 aaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttata 125  Q
    ||||| |||||||||||||| || || |||||||||||| ||| ||||| | |||||| |||||||||||||||||||| ||||||||||||||||||||    
T  10360668 aaaacgggaacacaacttgt-ct-atcatattgtgacttggtcgtttatttttatgacggggatgtgagcaattttggagcaatgttccttccttttata 10360765  T
Q  126 cctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||||||||| || ||    ||   ||||||||||||||||||||||||||||||||||||||||    
T  10360766 cctttcttctaacaatgggcaatcatagatgtccagttccttaagagagtcagggaggctgtcttctggtaat 10360838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 9853073 - 9852909
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||||||||| || || ||||||| || | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9853073 ggaacacaacttgt-ct-atcatattgtaacctggtcatttatttctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 9852976  T
Q  132 ttctaacaatggacattccctaattct-cagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    ||||||||||||||| ||| ||| | | ||||  ||| || |||||||||||||||||||||||||||    
T  9852975 ttctaacaatggaca-tccataaatgtccagtctcttcagtgagtcagggaggctgtcttctggtaat 9852909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 78 - 198
Target Start/End: Complemental strand, 9842010 - 9841890
Alignment:
Q  78 tatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtca 177  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||  ||||   || ||||||||||    
T  9842010 tatgacagggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatccccaaatgttcagacgctcaagagagtca 9841911  T
Q  178 gggaggctgtcttctggtaat 198  Q
    |||||||||||||||||||||    
T  9841910 gggaggctgtcttctggtaat 9841890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 198
Target Start/End: Complemental strand, 9980662 - 9980498
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||||||||| || || |||||||||||| || ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9980662 ggaacacaacttgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 9980565  T
Q  132 ttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||| ||  |    ||   ||||||||||||||| ||||||||||||||||||||||||    
T  9980564 ttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaat 9980498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 26 - 198
Target Start/End: Original strand, 10372778 - 10372948
Alignment:
Q  26 aaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttata 125  Q
    ||||| |||||||||||||| || || ||||||||| || ||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||||    
T  10372778 aaaacgggaacacaacttgt-ct-atcatattgtgatttggtcgtttatttttatgacggggatgtgagcaattttggaccaatgttccttccttttata 10372875  T
Q  126 cctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||||||||| ||| || ||||   ||||  ||| ||||||  ||||||||||||||||||||||    
T  10372876 cctttcttctaacaatgggcatcccataatgaccagtctcttcagagaggaagggaggctgtcttctggtaat 10372948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 84 - 198
Target Start/End: Complemental strand, 10130068 - 10129954
Alignment:
Q  84 agggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggagg 183  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |   ||| | ||||| | ||||||| |||||||||    
T  10130068 agggatgtgagcaattttggagcaatgttccttccttttatacctttcttctaacaatggacatccttgaatgcacagttgcataagagaatcagggagg 10129969  T
Q  184 ctgtcttctggtaat 198  Q
    |||||||||||||||    
T  10129968 ctgtcttctggtaat 10129954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 26 - 198
Target Start/End: Complemental strand, 10583784 - 10583614
Alignment:
Q  26 aaaactggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttata 125  Q
    ||||| |||||||||||||| || || |||||||||||| || |||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||    
T  10583784 aaaacgggaacacaacttgt-ct-atcatattgtgactttgtgatttatttgtatgacagggatgtgagcaattttggaccaatattcattccttttata 10583687  T
Q  126 cctttcttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||||||||| ||       ||  |||||  || |||||||||||||||||||||||||||||||    
T  10583686 cctttcttctaacaatgggcaaaattggatggtcagtcgctcaagagagtcagggaggctgtcttctggtaat 10583614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 10263897 - 10263788
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||||||||| || || ||||||||||||| ||||||||   ||||| |||||||||||||||||||||| |||||||||||||||||||||||||    
T  10263897 ggaacacaacttgt-ct-atcatattgtgacttcatcatttattcttatgaaagggatgtgagcaattttggactaatgttccttccttttatacctttc 10263800  T
Q  132 ttctaacaatgg 143  Q
    ||||||||||||    
T  10263799 ttctaacaatgg 10263788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 53 - 198
Target Start/End: Complemental strand, 10503828 - 10503683
Alignment:
Q  53 atattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccct 152  Q
    ||||||||||||   ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||   ||| |||         
T  10503828 atattgtgacttgtccatctatttctatgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaatgttgggcatctttg 10503729  T
Q  153 aattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||  |||||  ||||||||| ||||| ||||||||||||||||||    
T  10503728 aatgatcagtagcttaagagaatcaggaaggctgtcttctggtaat 10503683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 10092146 - 10092082
Alignment:
Q  79 atgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 143  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10092146 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgg 10092082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 79 - 143
Target Start/End: Complemental strand, 10199028 - 10198964
Alignment:
Q  79 atgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 143  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10199028 atgacagggatgtgagaaattttggaccaatgttccttccttttatacctttcttctaacaatgg 10198964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 10531933 - 10531868
Alignment:
Q  78 tatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 143  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||    
T  10531933 tatgacagggatgtgagaaattttggaccaattttccttccttttatacctttcttctaacaatgg 10531868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 10086352 - 10086265
Alignment:
Q  53 atattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaa 140  Q
    ||||||||| |||| ||||||| | ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  10086352 atattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaa 10086265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 53 - 140
Target Start/End: Complemental strand, 10193272 - 10193185
Alignment:
Q  53 atattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaa 140  Q
    ||||||||| |||| ||||||| | ||||||||| ||| ||| |||||||||||||||||||||||||||||||||||||| ||||||    
T  10193272 atattgtgatttcgccatttatttttatgacaggaatgagagaaattttggaccaatgttccttccttttatacctttcttttaacaa 10193185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 78 - 143
Target Start/End: Complemental strand, 10680731 - 10680666
Alignment:
Q  78 tatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 143  Q
    ||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  10680731 tatgacagggatgtgagaaattttggaccgatgttcattccttttatacctttcttctaacaatgg 10680666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 88 - 174
Target Start/End: Original strand, 11242500 - 11242586
Alignment:
Q  88 atgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccctaattctcagttccttaagagag 174  Q
    |||||||| ||||||||||||||||||| | ||| |||||||||||||||||  || |||||| |||| |||||| |||||||||||    
T  11242500 atgtgagctattttggaccaatgttcctgcttttgatacctttcttctaacacagggcattccttaatgctcagtaccttaagagag 11242586  T

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Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Original strand, 8585531 - 8585578
Alignment:
Q  68 catttatatctatgacagggatgtgagcaattttggaccaatgttcct 115  Q
    ||||||||| ||||||||| ||||||||||| ||||||||||||||||    
T  8585531 catttatatttatgacaggtatgtgagcaatgttggaccaatgttcct 8585578  T

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Target: scaffold0083 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 32 - 198
Target Start/End: Original strand, 54475 - 54639
Alignment:
Q  32 ggaacacaacttgttctcatgatattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 131  Q
    |||||||||||||| || || |||||||||||| || ||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54475 ggaacacaacttgt-ct-atcatattgtgactttgtaatttattgatatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttc 54572  T
Q  132 ttctaacaatggacattccctaattctcagttccttaagagagtcagggaggctgtcttctggtaat 198  Q
    |||||||||||| ||  |    ||   ||||||||||||||| ||||||||||||||||||||||||    
T  54573 ttctaacaatgggcaaccatcgatgtacagttccttaagagattcagggaggctgtcttctggtaat 54639  T

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Target: chr4 (Bit Score: 65; Significance: 9e-29; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 53 - 197
Target Start/End: Original strand, 17849815 - 17849959
Alignment:
Q  53 atattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatggacattccct 152  Q
    |||||||||||| ||| |  || |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |  || |||  ||     
T  17849815 atattgtgacttggtcctcaatttctatgacagggatgtgagcaattttggaccaatgttcctgccttttatacctttcttctaatatagggcatcgcca 17849914  T
Q  153 aattctcagttccttaagagagtcagggaggctgtcttctggtaa 197  Q
    |||   ||||  ||||||||||  |||||||||||||||||||||    
T  17849915 aatgaccagtcgcttaagagaggaagggaggctgtcttctggtaa 17849959  T

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Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 26910049 - 26909975
Alignment:
Q  69 atttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttctaacaatgg 143  Q
    |||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  26910049 atttatttgtatgacagggatgtgagcaattttggaccaatgttccttccttttgtacctttcttctaacaatgg 26909975  T

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Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 53 - 135
Target Start/End: Original strand, 44954552 - 44954634
Alignment:
Q  53 atattgtgacttcgtcatttatatctatgacagggatgtgagcaattttggaccaatgttccttccttttatacctttcttct 135  Q
    |||||||||||| | ||| ||| ||||||||| | || | |||||||||||||||||||||||||||| ||||||||||||||    
T  44954552 atattgtgacttggccatctatttctatgacatgaattttagcaattttggaccaatgttccttccttctatacctttcttct 44954634  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 106
Target Start/End: Complemental strand, 11488255 - 11488217
Alignment:
Q  68 catttatatctatgacagggatgtgagcaattttggacc 106  Q
    ||||||| ||| |||||||||||||||||||||||||||    
T  11488255 catttatttctttgacagggatgtgagcaattttggacc 11488217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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