View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18786_low_6 (Length: 574)
Name: NF18786_low_6
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18786_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 242 - 565
Target Start/End: Complemental strand, 40804501 - 40804178
Alignment:
| Q |
242 |
aggaagattcaacaacttggaggtgcatgaaaaagttgtatgaaaatcttgggatgaatcaagcttctttggtacctagtggatgaagaaacaaagatat |
341 |
Q |
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| T |
40804501 |
aggaagattcaacaacttggaggtgcataaaaaagttgtatgaaaatcttgggatgaatcaagcttctttggtacctagtggatgaagaaacaaagatat |
40804402 |
T |
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| Q |
342 |
taaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcacttatctttcctcttaaaa |
441 |
Q |
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| T |
40804401 |
taaagggtcgtcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaatgatttatgaccagtcgcttatctttcctcttaaaa |
40804302 |
T |
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| Q |
442 |
acttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatattaccaattatgtttctct |
541 |
Q |
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| T |
40804301 |
acttgagttgagtcaataattgattaagcattaatgactgagtttaaatatgttctttgactgtgttgagattcaaatatattaccaattatgtttctct |
40804202 |
T |
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| Q |
542 |
tttgttttaatcccttgatgatgt |
565 |
Q |
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| T |
40804201 |
tttgttttagtcccttgatgatgt |
40804178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 8 - 174
Target Start/End: Complemental strand, 40804735 - 40804569
Alignment:
| Q |
8 |
gttattgttgaaatagacctgctagcataaaatttataaactgtattatgtttggtgtcatatttaacttatatgaatttacgtaatacacatacacaaa |
107 |
Q |
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| T |
40804735 |
gttattgttgaaatagacctgctagcataaaacttataaattgtattatgtttggtgtcatatttaacttatatgaatttacataatacacatacacaaa |
40804636 |
T |
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| Q |
108 |
gagtcttgttcataaggtgtggagtatttgattatattggtttgaactatttcagatatttaaattg |
174 |
Q |
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| T |
40804635 |
gagtcttgttcataaggtgtggagtatttgattatattggtatgaactatttcagatatttaaattg |
40804569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 352 - 406
Target Start/End: Complemental strand, 5115901 - 5115847
Alignment:
| Q |
352 |
tcattgtcaagaaattgatatgtattgttccctttattaggcttgaaacaccaat |
406 |
Q |
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| T |
5115901 |
tcattgtcaagaaaatgatatgtcttgttcctgttattgggcttgaaacaccaat |
5115847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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