View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_60 (Length: 203)

Name: NF18786_low_60
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_60
NF18786_low_60
[»] chr8 (2 HSPs)
chr8 (92-186)||(23238830-23238924)
chr8 (102-187)||(23233431-23233516)
[»] chr2 (1 HSPs)
chr2 (121-187)||(20503559-20503625)
[»] chr7 (3 HSPs)
chr7 (129-186)||(23098546-23098603)
chr7 (120-152)||(16199767-16199799)
chr7 (123-183)||(23123081-23123141)
[»] chr4 (1 HSPs)
chr4 (119-187)||(16650935-16651003)


Alignment Details
Target: chr8 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 92 - 186
Target Start/End: Complemental strand, 23238924 - 23238830
Alignment:
Q  92 tcagaattagcttacccttggaaaaggttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccattttt 186  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  23238924 tcagaatgagcttacccttggaaaaggttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaacatttcagccattttt 23238830  T

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Target: chr8; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 102 - 187
Target Start/End: Complemental strand, 23233516 - 23233431
Alignment:
Q  102 cttacccttggaaaaggttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccatttttt 187  Q
    |||||| || ||||||| ||||||||||||||||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||    
T  23233516 cttaccattagaaaaggatacaacaagaaatagggaaactaaaatgatcatagtataaaaaaacttgaacatttcagccatttttt 23233431  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 187
Target Start/End: Complemental strand, 20503625 - 20503559
Alignment:
Q  121 acaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccatttttt 187  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||  ||||  |||| |||||||||||    
T  20503625 acaacaagaaatagggaaataaaaaggatcataatataaacaaatttgagaattttagccatttttt 20503559  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 186
Target Start/End: Complemental strand, 23098603 - 23098546
Alignment:
Q  129 aaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccattttt 186  Q
    ||||| ||||||||||| ||||||| |||||| || |||||  |||||||||||||||    
T  23098603 aaatatggaaacaaaaaggatcatagtataaacaaacttgagaatttcagccattttt 23098546  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 152
Target Start/End: Original strand, 16199767 - 16199799
Alignment:
Q  120 tacaacaagaaatagggaaacaaaaatgatcat 152  Q
    |||||||||||||||||||||||||| ||||||    
T  16199767 tacaacaagaaatagggaaacaaaaaggatcat 16199799  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 183
Target Start/End: Original strand, 23123081 - 23123141
Alignment:
Q  123 aacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccatt 183  Q
    ||||| |||||||||||||| |||||  ||| ||||||| | |||||| ||||||||||||    
T  23123081 aacaaaaaatagggaaacaagaatgactatagtataaaagaacttgaaaatttcagccatt 23123141  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 16651003 - 16650935
Alignment:
Q  119 ttacaacaagaaatagggaaacaaaaatgatcataatataaaaaatcttgaatatttcagccatttttt 187  Q
    ||||||||||||| |  |||||| ||||||||  |||||||||||||||||  ||| ||||||| ||||    
T  16651003 ttacaacaagaaacaaagaaacataaatgatcgcaatataaaaaatcttgagaattccagccatatttt 16650935  T

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