View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18786_low_9 (Length: 513)

Name: NF18786_low_9
Description: NF18786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18786_low_9
NF18786_low_9
[»] chr7 (13 HSPs)
chr7 (10-310)||(29195511-29195803)
chr7 (301-484)||(29195829-29196004)
chr7 (10-209)||(27156166-27156362)
chr7 (206-255)||(5644675-5644724)
chr7 (208-255)||(6498777-6498824)
chr7 (208-255)||(29065931-29065978)
chr7 (208-255)||(34388377-34388424)
chr7 (205-255)||(25189238-25189288)
chr7 (205-255)||(29065816-29065866)
chr7 (205-255)||(40110734-40110784)
chr7 (206-255)||(21635883-21635932)
chr7 (206-251)||(35776971-35777016)
chr7 (206-255)||(43955515-43955564)
[»] chr6 (3 HSPs)
chr6 (205-255)||(9763124-9763174)
chr6 (206-253)||(28918163-28918210)
chr6 (208-255)||(34245006-34245053)
[»] chr3 (16 HSPs)
chr3 (208-257)||(46429506-46429555)
chr3 (204-255)||(9129456-9129507)
chr3 (204-255)||(9137563-9137614)
chr3 (208-255)||(31189422-31189469)
chr3 (208-255)||(47284338-47284385)
chr3 (206-252)||(46001362-46001408)
chr3 (206-255)||(44692934-44692983)
chr3 (205-257)||(7302343-7302395)
chr3 (212-255)||(1146970-1147013)
chr3 (206-257)||(42005976-42006027)
chr3 (210-255)||(39215950-39215995)
chr3 (206-255)||(44436256-44436305)
chr3 (208-257)||(47767432-47767481)
chr3 (206-255)||(49457341-49457390)
chr3 (207-255)||(5415782-5415830)
chr3 (227-255)||(31070518-31070546)
[»] chr4 (14 HSPs)
chr4 (205-257)||(41498600-41498652)
chr4 (210-255)||(26250911-26250956)
chr4 (208-255)||(4896648-4896695)
chr4 (206-255)||(15660181-15660230)
chr4 (205-257)||(10127971-10128023)
chr4 (207-255)||(31742876-31742924)
chr4 (208-255)||(5715744-5715791)
chr4 (208-255)||(14982280-14982327)
chr4 (208-255)||(15660295-15660342)
chr4 (205-255)||(9451158-9451208)
chr4 (210-255)||(31742778-31742823)
chr4 (206-255)||(36456038-36456087)
chr4 (210-255)||(42844655-42844700)
chr4 (207-255)||(10354341-10354389)
[»] chr1 (17 HSPs)
chr1 (210-255)||(50005191-50005236)
chr1 (206-257)||(38277413-38277464)
chr1 (205-255)||(31166307-31166357)
chr1 (206-255)||(8224766-8224815)
chr1 (206-255)||(15034657-15034706)
chr1 (206-255)||(26501105-26501154)
chr1 (206-255)||(27935597-27935646)
chr1 (210-255)||(40264142-40264187)
chr1 (206-255)||(50005077-50005126)
chr1 (205-257)||(27804375-27804427)
chr1 (196-255)||(23536055-23536114)
chr1 (207-257)||(10166498-10166548)
chr1 (209-255)||(32573034-32573080)
chr1 (211-253)||(51847855-51847897)
chr1 (226-255)||(38277527-38277556)
chr1 (206-255)||(44410423-44410472)
chr1 (207-255)||(32287959-32288007)
[»] scaffold0009 (1 HSPs)
scaffold0009 (208-255)||(41997-42044)
[»] chr8 (11 HSPs)
chr8 (205-255)||(14991689-14991739)
chr8 (208-257)||(24044960-24045009)
chr8 (208-257)||(28324696-28324745)
chr8 (208-255)||(33902667-33902714)
chr8 (206-253)||(36103099-36103146)
chr8 (204-239)||(36625259-36625294)
chr8 (208-255)||(37268119-37268166)
chr8 (204-257)||(11744753-11744806)
chr8 (210-255)||(13404829-13404874)
chr8 (210-255)||(15186853-15186898)
chr8 (206-255)||(40046802-40046851)
[»] chr2 (10 HSPs)
chr2 (205-255)||(17180294-17180344)
chr2 (203-255)||(11981582-11981634)
chr2 (208-255)||(14365811-14365858)
chr2 (205-252)||(29279048-29279095)
chr2 (208-255)||(45094497-45094544)
chr2 (205-255)||(14365697-14365747)
chr2 (206-255)||(39630223-39630272)
chr2 (214-255)||(40026070-40026111)
chr2 (210-255)||(41461517-41461562)
chr2 (207-255)||(14537198-14537246)
[»] chr5 (11 HSPs)
chr5 (206-255)||(6634013-6634062)
chr5 (210-255)||(13243516-13243561)
chr5 (208-255)||(37722917-37722964)
chr5 (214-255)||(8255033-8255074)
chr5 (206-255)||(9764336-9764385)
chr5 (208-257)||(11601040-11601088)
chr5 (206-255)||(15374072-15374121)
chr5 (208-257)||(22303891-22303940)
chr5 (210-255)||(28828459-28828504)
chr5 (206-255)||(40090437-40090486)
chr5 (206-255)||(40643929-40643978)
[»] scaffold0169 (1 HSPs)
scaffold0169 (206-255)||(4073-4122)


Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 310
Target Start/End: Original strand, 29195511 - 29195803
Alignment:
Q  10 acatcatcattacacaaacgtacaatttgggggctgtcggttagtatagtatcatagttgtggataatcttagtgaggtatttcaagaaatttccataat 109  Q
    |||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  29195511 acatcatcattacacaaacgtacaatttaggggctgtcggttagcatagtatcatagttgtggataatctttgtgaggtatttcaagaaatttccataat 29195610  T
Q  110 tttctattctcttggtttctacaatacattcaccaattgaaatggtttagtacatttgcattctaaactaataaattaacgataaattttatgaattaag 209  Q
    |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  29195611 tttctattctcttgttttctacaatacatttaccaattgaaatggtttagtacatttgcattctaaactaataaatcaacgataaattttatgaattaag 29195710  T
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaagttttgaaggaattcaaattaggtttgaagtgattgaacgactgtcaactgtc 309  Q
    |||||||||| ||| ||||||||||||||||||||||||        |||||||| ||||| ||||||| |||||||||||||||||||| |||||||||    
T  29195711 agtgtgtttggatggaggaatattttgaggtaatgtaat--------gttttgaaagaatttaaattagatttgaagtgattgaacgactatcaactgtc 29195802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 301 - 484
Target Start/End: Original strand, 29195829 - 29196004
Alignment:
Q  301 tcaactgtctttttagttaaaattaaaacaatctcaattatacaattgtgatcgaacgtctatcattcattacaacatcctctagagaatcctattccca 400  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||        |||||||||||||||| ||||||||||||||||||||||    
T  29195829 tcaactgtctttttagttaaaattaaaacaatctcagttatacaattgtgatc--------atcattcattacaacaccctctagagaatcctattccca 29195920  T
Q  401 acttgaccggcctacaatttgtaaaagacaaactctatggcctagtagtaattttattcaattgattatttatttattcatttc 484  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29195921 acttgaccggcctacaatttgtaaaagacaaactctatggcctagtagtaattttattcaattgattatttatttattcatttc 29196004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 10 - 209
Target Start/End: Complemental strand, 27156362 - 27156166
Alignment:
Q  10 acatcatcattacacaaacgtacaatttgggggctgtcggttagtatagtatcatagttgtggataatcttagtgaggtatttcaagaaatttccataat 109  Q
    |||||||||| ||||||| | ||||||| ||| | |||||||||||  ||||||| ||  ||||||||||||||||||||||||||||||||||||||||    
T  27156362 acatcatcat-acacaaaagcacaatttagggtc-gtcggttagta--gtatcatggtaatggataatcttagtgaggtatttcaagaaatttccataat 27156267  T
Q  110 tttctattctc-ttggtttctacaatacattcaccaattgaaatggtttagtacatttgcattctaaactaataaattaacgataaattttatgaattaa 208  Q
    |||| | ||||  | ||||  || |||||||||| ||||||  || || ||||||||||  |||||||||||||||  |||||| | |||||||||||||    
T  27156266 tttcgactctcaatagttttcacgatacattcactaattgatgtgtttcagtacatttgtgttctaaactaataaaccaacgatcatttttatgaattaa 27156167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 5644675 - 5644724
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||||||| |||||| |||||||| |||||||||||||||    
T  5644675 taagagtgtgtttgaatggaggaatgttttgagggaatgtaatgttttga 5644724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 6498824 - 6498777
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  6498824 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 6498777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 29065978 - 29065931
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||| |||||| |||| |||||||||||||||||||    
T  29065978 agagtgtgtttggatggaggaatgttttaaggtaatgtaatgttttga 29065931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 34388424 - 34388377
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||||| ||||| |||||||| |||||||| ||||||    
T  34388424 agagtgtgtttgaatgatggaatgttttgagggaatgtaatattttga 34388377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 25189288 - 25189238
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| |||  ||||| ||||||||||||| ||||||||||    
T  25189288 ttaagagtgtgtttggatgtgggaatgttttgaggtaatgcaatgttttga 25189238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 29065816 - 29065866
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| ||| | |||| |||||||| |||||||||||||||    
T  29065816 ttaagagtgtgtttggatggatgaatgttttgagggaatgtaatgttttga 29065866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 40110734 - 40110784
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  40110734 ttaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 40110784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 21635883 - 21635932
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| ||| |||   |||||||||||||||||||||||||||||    
T  21635883 taagagtgtgcttggatgggagaatattttgaggtaatgtaatgttttga 21635932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 251
Target Start/End: Complemental strand, 35777016 - 35776971
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgtt 251  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||||    
T  35777016 taagagtgtgtttggatgagggaatgttttgagggaatgtaatgtt 35776971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 43955515 - 43955564
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  43955515 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 43955564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 9763174 - 9763124
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  9763174 ttaagagtgtgtttggatggaggaatattttgaggtaatgtaatgttttga 9763124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 28918163 - 28918210
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgtttt 253  Q
    |||||||||||||| ||| |||||| |||||||| |||||||||||||    
T  28918163 taagagtgtgtttggatggaggaatgttttgagggaatgtaatgtttt 28918210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 34245053 - 34245006
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  34245053 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 34245006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 46429555 - 46429506
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  46429555 agagtgtgtttggatgagggaatattttgaggtaatgtaatgttttgaag 46429506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 9129507 - 9129456
Alignment:
Q  204 attaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  9129507 attaagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttga 9129456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 204 - 255
Target Start/End: Complemental strand, 9137614 - 9137563
Alignment:
Q  204 attaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  9137614 attaagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttga 9137563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 31189469 - 31189422
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||||||  |||| ||||||||||||||||||||||||    
T  31189469 agagtgtgtttgaatgagagaatgttttgaggtaatgtaatgttttga 31189422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 47284385 - 47284338
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||||  |||||||||||||||||||||||||||||    
T  47284385 agagtgtgtttggatgagagaatattttgaggtaatgtaatgttttga 47284338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 252
Target Start/End: Original strand, 46001362 - 46001408
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttt 252  Q
    |||||||||||||| |||  |||||||||||||||||||||||||||    
T  46001362 taagagtgtgtttggatggcggaatattttgaggtaatgtaatgttt 46001408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 44692983 - 44692934
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  44692983 taagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 44692934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 7302343 - 7302395
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    ||||||||||||||| |||| ||||| |||||||  |||||||||||||||||    
T  7302343 ttaagagtgtgtttggatgagggaatgttttgagagaatgtaatgttttgaag 7302395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 1147013 - 1146970
Alignment:
Q  212 tgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||    
T  1147013 tgtgtttgaatgagggaatattttgagctaatgtaattttttga 1146970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 257
Target Start/End: Complemental strand, 42006027 - 42005976
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||||||||    
T  42006027 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaag 42005976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 39215995 - 39215950
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| ||||  ||||||||||||||||| |||||||||||    
T  39215995 agtgtgtttggatgagagaatattttgaggtaatataatgttttga 39215950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 44436256 - 44436305
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  44436256 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 44436305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 47767432 - 47767481
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||| |||  ||||| |||||||| |||||||||||||||||    
T  47767432 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaag 47767481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 49457341 - 49457390
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  49457341 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 49457390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 5415782 - 5415830
Alignment:
Q  207 aagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||| ||   |||||||||||||| |||||||||||||||    
T  5415782 aagagtgtgtttggataggggaatattttgagggaatgtaatgttttga 5415830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 227 - 255
Target Start/End: Complemental strand, 31070546 - 31070518
Alignment:
Q  227 gaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||||||||||||||||||    
T  31070546 gaatattttgaggtaatgtaatgttttga 31070518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 41498652 - 41498600
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||||||||||||    
T  41498652 ttaagagtgtgtttggatggaggaatattttgagggaatgtaatgttttgaag 41498600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 26250911 - 26250956
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| |||| ||||||||||||||||||||||||||||||    
T  26250911 agtgtgtttggatgagggaatattttgaggtaatgtaatgttttga 26250956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 4896648 - 4896695
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| |||  ||||||||||||||||||||||||||||||    
T  4896648 agagtgtgtttggatgggggaatattttgaggtaatgtaatgttttga 4896695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 15660181 - 15660230
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||   ||||||||||||||||||||||||||||||    
T  15660181 taagagtgtgtttggataggggaatattttgaggtaatgtaatgttttga 15660230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Original strand, 10127971 - 10128023
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||| |||||||||| |||  |||||||||||| |||||||||||||||||||    
T  10127971 ttaatagtgtgtttggatgggggaatattttgaagtaatgtaatgttttgaag 10128023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 31742924 - 31742876
Alignment:
Q  207 aagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  31742924 aagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 31742876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 5715744 - 5715791
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| |||| ||||| ||||||| ||||||||||||||||    
T  5715744 agagtgtgtttggatgagggaatgttttgagataatgtaatgttttga 5715791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 14982280 - 14982327
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  14982280 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 14982327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 15660342 - 15660295
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  15660342 agagtgtgtttggatgagggaatgttttgagggaatgtaatgttttga 15660295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 255
Target Start/End: Complemental strand, 9451208 - 9451158
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||| ||| |||||| |||||||||| |||| |||||||||||||||||||    
T  9451208 ttaaaagtttgtttggatgaaggaatgttttaaggtaatgtaatgttttga 9451158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 31742778 - 31742823
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| ||| ||||||||||| ||||| |||||||||||||    
T  31742778 agtgtgtttggatggaggaatattttaaggtagtgtaatgttttga 31742823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 36456087 - 36456038
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||| |||||| |||||||| |||||||| ||||||    
T  36456087 taagagtgtgtttggatggaggaatgttttgagggaatgtaatattttga 36456038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 42844700 - 42844655
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||    
T  42844700 agtgtgtttggatggggaaatattttgaggtaatgtaatgttttga 42844655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 10354341 - 10354389
Alignment:
Q  207 aagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||  || || |||| ||||||||||||||||||||||||    
T  10354341 aagagtgtgtttagataaatgaatgttttgaggtaatgtaatgttttga 10354389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 50005236 - 50005191
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||    
T  50005236 agtgtgtttggatggaggaatattttgaggtaatgtaatgttttga 50005191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 38277413 - 38277464
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||||| ||||  ||||||||||||| |||||||||||||||||    
T  38277413 taagagtgtgtttggatgagagaatattttgagggaatgtaatgttttgaag 38277464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 31166307 - 31166357
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| |||| ||||| ||||||| ||||||||||||||||    
T  31166307 ttaagagtgtgtttggatgagggaatgttttgagataatgtaatgttttga 31166357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 8224766 - 8224815
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  8224766 taagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttga 8224815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 15034657 - 15034706
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  15034657 taagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 15034706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 26501154 - 26501105
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  26501154 taagagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 26501105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 27935646 - 27935597
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||| || |||||||||||| |||||||||||||||    
T  27935646 taagagtgtgtttggatggagaaatattttgagggaatgtaatgttttga 27935597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 40264187 - 40264142
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||    
T  40264187 agtgtgtttggatgggggaatattttgaggtaatgtaatgttttga 40264142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 50005077 - 50005126
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||| |||||||||||||  |||||||||||||||    
T  50005077 taagagtgtgtttggatgacggaatattttgagagaatgtaatgttttga 50005126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 257
Target Start/End: Complemental strand, 27804427 - 27804375
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    ||||||||||||||| ||| |||||| |||||||| |||||||||||| ||||    
T  27804427 ttaagagtgtgtttggatggaggaatgttttgaggaaatgtaatgtttagaag 27804375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 23536055 - 23536114
Alignment:
Q  196 ttttatgaattaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||| ||| ||||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  23536055 ttttgtgacttaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 23536114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 10166498 - 10166548
Alignment:
Q  207 aagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    ||||||||||||| ||||  |||| ||||| ||||||||||||||||||||    
T  10166498 aagagtgtgtttggatgagagaatgttttgtggtaatgtaatgttttgaag 10166548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 255
Target Start/End: Complemental strand, 32573080 - 32573034
Alignment:
Q  209 gagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||| ||| |||  ||||||||||||||||||||||||||||||    
T  32573080 gagtgtgattggatgggggaatattttgaggtaatgtaatgttttga 32573034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 211 - 253
Target Start/End: Original strand, 51847855 - 51847897
Alignment:
Q  211 gtgtgtttgaatgaaggaatattttgaggtaatgtaatgtttt 253  Q
    ||||||||| ||| |||||| ||||||||||||||||||||||    
T  51847855 gtgtgtttggatggaggaatgttttgaggtaatgtaatgtttt 51847897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 255
Target Start/End: Complemental strand, 38277556 - 38277527
Alignment:
Q  226 ggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||||||||||||||||||    
T  38277556 ggaatattttgaggtaatgtaatgttttga 38277527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 44410472 - 44410423
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||   |||||||||||||||||||||| |||||||    
T  44410472 taagagtgtgtttggattggggaatattttgaggtaatgtaaagttttga 44410423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 32288007 - 32287959
Alignment:
Q  207 aagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||| ||| |||||  |||||||| |||||||||||||||    
T  32288007 aagagtgtgtttggatggaggaaagttttgagggaatgtaatgttttga 32287959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 41997 - 42044
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||||| |||||| |||||||| |||||||||||||||    
T  41997 agagtgtgtttgaatggaggaatgttttgagggaatgtaatgttttga 42044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 14991689 - 14991739
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| |||  ||||| ||||||||||||||||||||||||    
T  14991689 ttaagagtgtgtttggatgggggaatgttttgaggtaatgtaatgttttga 14991739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 24044960 - 24045009
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||| |||| ||||| |||||||| |||||||||||||||||    
T  24044960 agagtgtgtttggatgagggaatgttttgagggaatgtaatgttttgaag 24045009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 28324745 - 28324696
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||| ||| |||||| |||||||| |||||||||||||||||    
T  28324745 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttgaag 28324696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Original strand, 33902667 - 33902714
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  33902667 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 33902714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 36103099 - 36103146
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgtttt 253  Q
    |||||||||||||| ||| |||||| |||||||| |||||||||||||    
T  36103099 taagagtgtgtttggatggaggaatgttttgagggaatgtaatgtttt 36103146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 239
Target Start/End: Complemental strand, 36625294 - 36625259
Alignment:
Q  204 attaagagtgtgtttgaatgaaggaatattttgagg 239  Q
    |||||||||||||||| |||||||||||||||||||    
T  36625294 attaagagtgtgtttggatgaaggaatattttgagg 36625259  T

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Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 37268166 - 37268119
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||   ||||||||||||||||||||||||||||||    
T  37268166 agagtgtgtttggataggggaatattttgaggtaatgtaatgttttga 37268119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 204 - 257
Target Start/End: Complemental strand, 11744806 - 11744753
Alignment:
Q  204 attaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||||||| ||||  |||||||| |||| ||||||||||| |||||    
T  11744806 attaagagtgtgtttggatgagagaatatttagagggaatgtaatgttgtgaag 11744753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 13404829 - 13404874
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||    
T  13404829 agtgtgtttggatggggaaatattttgaggtaatgtaatgttttga 13404874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 15186898 - 15186853
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  15186898 agtgtgtttgaatgaaaaaatgttttgagataatgtaatgttttga 15186853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 40046802 - 40046851
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| ||| | |||| |||||||| |||||||||||||||    
T  40046802 taagagtgtgtttggatggatgaatgttttgagggaatgtaatgttttga 40046851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 17180294 - 17180344
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| |||| ||||| |||||||| |||||||||||||||    
T  17180294 ttaagagtgtgtttggatgagggaatgttttgagggaatgtaatgttttga 17180344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 203 - 255
Target Start/End: Complemental strand, 11981634 - 11981582
Alignment:
Q  203 aattaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||| |||||||||||| ||||| |||||||||  ||||||||||||||||||    
T  11981634 aatttagagtgtgtttggatgaaagaatattttagggtaatgtaatgttttga 11981582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 14365858 - 14365811
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| ||| |||||| |||||||| |||||||||||||||    
T  14365858 agagtgtgtttggatggaggaatgttttgagggaatgtaatgttttga 14365811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 29279095 - 29279048
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttt 252  Q
    |||| ||| |||||| |||||||||| |||||||||||||||||||||    
T  29279095 ttaaaagtttgtttggatgaaggaatgttttgaggtaatgtaatgttt 29279048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 45094544 - 45094497
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||||| ||||| |||||||| ||| |||||||||||    
T  45094544 agagtgtgtttgaatgagggaatgttttgagggaatataatgttttga 45094497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 205 - 255
Target Start/End: Original strand, 14365697 - 14365747
Alignment:
Q  205 ttaagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  14365697 ttaagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 14365747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 39630223 - 39630272
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||||||| || ||| |||||||| |||||| ||||||||    
T  39630223 taagagtgtgtttgaatggagaaatgttttgagggaatgtattgttttga 39630272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 40026070 - 40026111
Alignment:
Q  214 tgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||  |||||||||||||||||| |||||||||||    
T  40026070 tgtttgaatgggggaatattttgaggtaatataatgttttga 40026111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Original strand, 41461517 - 41461562
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||    
T  41461517 agtgtgtttggatggggaaatattttgaggtaatgtaatgttttga 41461562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 255
Target Start/End: Original strand, 14537198 - 14537246
Alignment:
Q  207 aagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    ||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  14537198 aagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 14537246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 6634013 - 6634062
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  || |||||||||||||||||||||||||||    
T  6634013 taagagtgtgtttggatggggggatattttgaggtaatgtaatgttttga 6634062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 13243561 - 13243516
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| |||  ||||||||||||||||||||||||||||||    
T  13243561 agtgtgtttggatgggggaatattttgaggtaatgtaatgttttga 13243516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 255
Target Start/End: Complemental strand, 37722964 - 37722917
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||| |||  |||||||||||||| |||||||||||||||    
T  37722964 agagtgtgtttggatgggggaatattttgagggaatgtaatgttttga 37722917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 8255033 - 8255074
Alignment:
Q  214 tgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| ||||||| ||| |||||||||||||||||||    
T  8255033 tgtttgaatggaggaatactttaaggtaatgtaatgttttga 8255074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 9764336 - 9764385
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  |||||||||||||| || ||||||||||||    
T  9764336 taagagtgtgtttggatgggggaatattttgagggaaagtaatgttttga 9764385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Original strand, 11601040 - 11601088
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    ||||||||||||||||| | |||||||| ||||||| |||||||||||||    
T  11601040 agagtgtgtttgaatgatg-aatattttaaggtaatataatgttttgaag 11601088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 15374121 - 15374072
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  15374121 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 15374072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 257
Target Start/End: Complemental strand, 22303940 - 22303891
Alignment:
Q  208 agagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttgaag 257  Q
    |||||||||||| |||  ||||| |||||||| |||||||||||||||||    
T  22303940 agagtgtgtttggatgggggaatgttttgagggaatgtaatgttttgaag 22303891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 255
Target Start/End: Complemental strand, 28828504 - 28828459
Alignment:
Q  210 agtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||| |||  | ||||||||||||||||||||||||||||    
T  28828504 agtgtgtttggatggggaaatattttgaggtaatgtaatgttttga 28828459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 40090486 - 40090437
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  40090486 taagagtgtgtttggatgggggaatgttttgaggaaatgtaatgttttga 40090437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Complemental strand, 40643978 - 40643929
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| |||  ||||| |||||||| |||||||||||||||    
T  40643978 taagagtgtgtttggatgggggaatgttttgagggaatgtaatgttttga 40643929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0169 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0169
Description:

Target: scaffold0169; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 255
Target Start/End: Original strand, 4073 - 4122
Alignment:
Q  206 taagagtgtgtttgaatgaaggaatattttgaggtaatgtaatgttttga 255  Q
    |||||||||||||| || ||||||| |||||||  |||||||||||||||    
T  4073 taagagtgtgtttggataaaggaatgttttgagagaatgtaatgttttga 4122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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