View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18787_high_5 (Length: 456)
Name: NF18787_high_5
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 1 - 365
Target Start/End: Complemental strand, 35855748 - 35855388
Alignment:
| Q |
1 |
ctccttaagcaaaatgtgtatttataattgtttaattaaaaatgcacttagtggcttaccatgacatcattaaacctattctttaggaaagcaggaccta |
100 |
Q |
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| T |
35855748 |
ctccttaagcaaaatgtgtatttataattgtttaattaaaaatgcacttagtggcttaccatgacatcattaaacctattctttaggaaagcaggaccta |
35855649 |
T |
|
| Q |
101 |
gtttgtaatctttttcaagtttaccaagttgaggaagttcttgcacccttttgtttaggatatcaattggagattgtaattttccattcccacaaagttt |
200 |
Q |
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| T |
35855648 |
gtttgtaatctttttcaagtttaccaagttgaggaagttcttgcacccttttgtttaggatatcaattggagattgtaattttccattcccacaaagttt |
35855549 |
T |
|
| Q |
201 |
ccattctggtttcagattcccccaattctctggtcctttactatctccttttttgtagttgtattcgtttcctaataaaaaagaagaaaatccatgacca |
300 |
Q |
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| T |
35855548 |
ccattctggtttcagattcccccagttctctggtcctttactatctccttttttgtagttgtattcgtttcctaataaaaatgatgaaaatccatgacca |
35855449 |
T |
|
| Q |
301 |
aaatcattaaaattaaaccaagcattaagataccaatggttggttgtgaggaataacaacatcta |
365 |
Q |
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| T |
35855448 |
aaatcattaaaattaaaccaagcattaagataccaatg----gttgtgaggaataacaacatcta |
35855388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 362 - 442
Target Start/End: Complemental strand, 35855368 - 35855288
Alignment:
| Q |
362 |
tctaacattagattttgaaaatgataatagaaaaatgtctaatatatatgatacataccaccatcagaatcagaagctgat |
442 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
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| T |
35855368 |
tctaacattagattttgaaaatgataatagaaaaatgtctaatatatatgattcataccaccaccagaatcagaagctgat |
35855288 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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