View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18787_high_6 (Length: 448)

Name: NF18787_high_6
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18787_high_6
NF18787_high_6
[»] chr4 (7 HSPs)
chr4 (18-448)||(36421205-36421645)
chr4 (191-349)||(36414022-36414177)
chr4 (35-117)||(30557254-30557336)
chr4 (24-106)||(49262657-49262739)
chr4 (24-118)||(49576867-49576961)
chr4 (413-448)||(36414190-36414225)
chr4 (24-66)||(27030418-27030460)
[»] chr8 (7 HSPs)
chr8 (24-127)||(8484999-8485102)
chr8 (29-127)||(3058027-3058125)
chr8 (24-127)||(28783060-28783163)
chr8 (24-124)||(36205198-36205296)
chr8 (24-128)||(968361-968465)
chr8 (24-125)||(3624582-3624682)
chr8 (52-116)||(26061699-26061763)
[»] chr1 (6 HSPs)
chr1 (24-127)||(18037586-18037689)
chr1 (76-127)||(45235404-45235455)
chr1 (29-127)||(952511-952609)
chr1 (25-75)||(52434873-52434923)
chr1 (34-66)||(35275160-35275192)
chr1 (39-103)||(40087936-40088000)
[»] chr7 (7 HSPs)
chr7 (50-128)||(39499718-39499796)
chr7 (35-127)||(22760863-22760955)
chr7 (76-127)||(2446308-2446359)
chr7 (35-127)||(20335815-20335907)
chr7 (24-106)||(42711979-42712061)
chr7 (49-106)||(24438245-24438302)
chr7 (49-133)||(43215178-43215262)
[»] chr2 (11 HSPs)
chr2 (29-129)||(26545838-26545938)
chr2 (24-66)||(31573614-31573656)
chr2 (34-127)||(19016031-19016124)
chr2 (29-118)||(21213778-21213867)
chr2 (24-128)||(42327368-42327472)
chr2 (24-127)||(29197349-29197452)
chr2 (48-127)||(37480075-37480154)
chr2 (33-128)||(38551767-38551862)
chr2 (34-116)||(24191849-24191931)
chr2 (29-127)||(29503271-29503368)
chr2 (24-97)||(33582003-33582076)
[»] scaffold0258 (1 HSPs)
scaffold0258 (24-127)||(15296-15399)
[»] chr5 (2 HSPs)
chr5 (76-127)||(8278300-8278351)
chr5 (24-128)||(16773806-16773910)
[»] chr3 (6 HSPs)
chr3 (24-127)||(10499082-10499185)
chr3 (24-69)||(54990760-54990805)
chr3 (24-68)||(49397514-49397558)
chr3 (35-71)||(53593984-53594020)
chr3 (29-115)||(47236949-47237035)
chr3 (24-69)||(17035044-17035089)
[»] chr6 (3 HSPs)
chr6 (30-127)||(33549104-33549201)
chr6 (24-119)||(12216752-12216847)
chr6 (24-96)||(12633040-12633112)
[»] scaffold0101 (1 HSPs)
scaffold0101 (51-106)||(43332-43387)


Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-156; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 18 - 448
Target Start/End: Original strand, 36421205 - 36421645
Alignment:
Q  18 aaaattttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaacc 117  Q
    |||||||||||||||||||||||||| |||| | |||||||||||||||||| | ||||||||||||| |||||| ||||||||||||||||||||||||    
T  36421205 aaaattttagtccacctaaattgacaccgagaataatcgaacatgagaccttgagaaagagcacactcgcaagtctcaatctaataccatcagaccaacc 36421304  T
Q  118 ctagtgggttctttgtcattcaatatta-----------------cttctattgcaaatataattaatcattatcaaaataacaatgtaaaaattaaatt 200  Q
    ||||||| ||||||||||||||||||||                 |||||||| ||||||||||    ||||||||||||||||||||||||||||||||    
T  36421305 ctagtgg-ttctttgtcattcaatattaaaacctactaataaatacttctattacaaatataat----cattatcaaaataacaatgtaaaaattaaatt 36421399  T
Q  201 tcacatagaaaagagtttaatagatataaaccaaccgtgtaaataagttttacagcatctttcaaaaagaaaccatcatattttcatagatgtatatttt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  36421400 tcacatagaaaagagtttaatagatataaaccaaccgtgtaaataagttttacaccatctttcaaaaagaaaccatcatattttcatagatgtatatttt 36421499  T
Q  301 ataacccggttttttaaaataagttaatatatttttcgtgcatacaaaattattaactttcgnnnnnnnnnngacccatgaatgttttcatccctaaaag 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||    
T  36421500 ataacccggttttttaaaataagttaatatatttttcgtgcatacaaaattattaactttcg--ttttttttgacccatgaatgttttcatccctaaaag 36421597  T
Q  401 aaagaattgattgaaatttggaccctactcttaattcaacatacattt 448  Q
    || |||||||| ||||||||||| ||||||||||||||||||| ||||    
T  36421598 aacgaattgatggaaatttggacgctactcttaattcaacatatattt 36421645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 191 - 349
Target Start/End: Original strand, 36414022 - 36414177
Alignment:
Q  191 aaattaaatttcacatagaaaagagtttaatagatataaaccaaccgtgtaaataagttttacagcatctttcaaaaagaaaccatcatattttcataga 290  Q
    |||||| ||||||||||| |||||||||||   |||||||||||||| ||||||| ||||||||   || ||||||||||||||||| |||| ||||  |    
T  36414022 aaattatatttcacataggaaagagtttaa---atataaaccaaccgcgtaaatatgttttacactgtcgttcaaaaagaaaccatcgtattgtcatgta 36414118  T
Q  291 tgtatattttataacccggttttttaaaataagtt-aatatatttttcgtgcatacaaaa 349  Q
    |||||| |||||||||   ||||  |||||||||| |||||||||| ||| || ||||||    
T  36414119 tgtata-tttataaccaatttttcaaaaataagttaaatatattttccgtccagacaaaa 36414177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 35 - 117
Target Start/End: Original strand, 30557254 - 30557336
Alignment:
Q  35 aaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaacc 117  Q
    ||||||||||||| |||||||||||||||| |||  |||| ||||||||||  | |||||||   ||||||| ||||||||||    
T  30557254 aaattgacatcgaagagaatcgaacatgagccctcgaaaaggagcacactcctacgtcccaagtcaataccaccagaccaacc 30557336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 106
Target Start/End: Original strand, 49262657 - 49262739
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaatacca 106  Q
    |||| |||||||||||| ||  | |||||||||||| |||||||| || || |||||||||| |||||||||| | |||||||    
T  49262657 ttagcccacctaaattggcactggggagaatcgaacctgagacctcaacaaggagcacactctcaagtcccaagcgaatacca 49262739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 118
Target Start/End: Original strand, 49576867 - 49576961
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccc 118  Q
    |||||||||| |||||||||| |  ||||||||||| ||||||||| |  | |||||||||| ||||||| || | ||||||| ||| |||||||    
T  49576867 ttagtccacccaaattgacattggagagaatcgaacctgagaccttgaggaggagcacactcccaagtccaaagccaataccaccaggccaaccc 49576961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 448
Target Start/End: Original strand, 36414190 - 36414225
Alignment:
Q  413 gaaatttggaccctactcttaattcaacatacattt 448  Q
    ||||||||||||||||||||||||||||||| ||||    
T  36414190 gaaatttggaccctactcttaattcaacatatattt 36414225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 66
Target Start/End: Complemental strand, 27030460 - 27030418
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagac 66  Q
    |||||||||| |||||| ||||||||||||| |||||||||||    
T  27030460 ttagtccacccaaattggcatcgaggagaattgaacatgagac 27030418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 8485102 - 8484999
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| |||||||||||| || ||  |||||||||| ||||||||| ||| | ||||||||||||| ||||||| | ||||||| ||| ||||||| ||||    
T  8485102 ttagcccacctaaattggcaccggagagaatcgaaaatgagacctcaaagaggagcacactcacaggtcccaagcaaataccaccaggccaacccaagtg 8485003  T
Q  124 ggtt 127  Q
    ||||    
T  8485002 ggtt 8484999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 127
Target Start/End: Original strand, 3058027 - 3058125
Alignment:
Q  29 ccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    ||||||||||||||  ||| ||||||||||| |||||||||  | | |||||||||| |||| ||||| | ||||||| ||||||||||| | ||||||    
T  3058027 ccacctaaattgacgccgaagagaatcgaacctgagaccttgcagaggagcacactcccaagacccaaaccaataccaccagaccaacccaaatgggtt 3058125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 28783163 - 28783060
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| ||||| |||||| || ||||||||||||||||||||||||| |  | |||||||||| || ||| ||| | ||||||| ||  ||||||| ||||    
T  28783163 ttagcccacccaaattggcaccgaggagaatcgaacatgagaccttgaggaggagcacactcccaggtctcaagccaataccaccaagccaacccaagtg 28783064  T
Q  124 ggtt 127  Q
    ||||    
T  28783063 ggtt 28783060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 124
Target Start/End: Complemental strand, 36205296 - 36205198
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||||||| ||||||||||  || |||||||||||||||||||||| |  | |||||||||| ||  || ||| | |||| |||||||||||||| ||||    
T  36205296 ttagtccatctaaattgac--cggggagaatcgaacatgagaccttgaggaggagcacactcccagatctcaaaccaataacatcagaccaacccaagtg 36205199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 968465 - 968361
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| |||||||||||| |||||  ||||||||||| ||||||||  |  | |||||||||| || ||||||| | ||||||| ||| ||||| | ||||    
T  968465 ttagcccacctaaattggcatcggagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccaggccaactcaagtg 968366  T
Q  124 ggttc 128  Q
    |||||    
T  968365 ggttc 968361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 125
Target Start/End: Complemental strand, 3624682 - 3624582
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| ||||||||||||||   ||| |||||||||| ||||||||| || | |||||||||| || ||||||| | |||||||  || ||||||| ||||    
T  3624682 ttagcccacctaaattgacccggag-agaatcgaacctgagaccttgaagaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 3624584  T
Q  124 gg 125  Q
    ||    
T  3624583 gg 3624582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 52 - 116
Target Start/End: Complemental strand, 26061763 - 26061699
Alignment:
Q  52 aatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaac 116  Q
    ||||||||||||||| || | || ||||| |||| |||||| ||| |||||| ||||||||||||    
T  26061763 aatcgaacatgagacattgagaaggagcatactctcaagtctcaagctaatatcatcagaccaac 26061699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 18037586 - 18037689
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| |||||||||| | || ||  ||||||||||| ||||| ||  |||| |||||||||| |||||||||| | |||| |||||||||||||| ||||    
T  18037586 ttagcccacctaaatcggcaccggagagaatcgaacttgagatctcgaaaaggagcacactcccaagtcccaaaccaatatcatcagaccaacccaagtg 18037685  T
Q  124 ggtt 127  Q
    ||||    
T  18037686 ggtt 18037689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 45235404 - 45235455
Alignment:
Q  76 gagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    |||||||||| |||||||||| | ||||||||||||||||||| ||||||||    
T  45235404 gagcacactcccaagtcccaaaccaataccatcagaccaacccaagtgggtt 45235455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 952609 - 952511
Alignment:
Q  29 ccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    |||||||||||||||||| |||||||| ||| |||||| || |  | |||||||||| || ||||||| | || |||| ||||||||| | ||||||||    
T  952609 ccacctaaattgacatcggggagaatctaacctgagactttgaggatgagcacactcccaggtcccaagccaacaccaccagaccaactcaagtgggtt 952511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 75
Target Start/End: Original strand, 52434873 - 52434923
Alignment:
Q  25 tagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaa 75  Q
    ||||||||| ||||| |||||| ||| |||||||||||||||||| |||||    
T  52434873 tagtccacccaaatttacatcggggaaaatcgaacatgagacctttaaaaa 52434923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 35275192 - 35275160
Alignment:
Q  34 taaattgacatcgaggagaatcgaacatgagac 66  Q
    |||||| ||||||||||||||||||||||||||    
T  35275192 taaattaacatcgaggagaatcgaacatgagac 35275160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 40087936 - 40088000
Alignment:
Q  39 tgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaata 103  Q
    ||||||||||||||||||||  || |||||| | || |||||||||| ||||| |||| ||||||    
T  40087936 tgacatcgaggagaatcgaatttgggaccttgagaaggagcacactctcaagttccaaactaata 40088000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 50 - 128
Target Start/End: Original strand, 39499718 - 39499796
Alignment:
Q  50 agaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggttc 128  Q
    ||||||||||||||||||||||| | || |||||||||| ||||||| | |||||||  || ||||||| |||||||||    
T  39499718 agaatcgaacatgagaccttaaagaggaacacactcacaggtcccaagccaataccactaggccaacccaagtgggttc 39499796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 35 - 127
Target Start/End: Complemental strand, 22760955 - 22760863
Alignment:
Q  35 aaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    |||||| ||||| |||||||||||| ||||||||| |  | |||||||||| || |||||||   ||||||| ||||||||||| ||||||||    
T  22760955 aaattggcatcggggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagtcaataccaccagaccaacccaagtgggtt 22760863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 127
Target Start/End: Complemental strand, 2446359 - 2446308
Alignment:
Q  76 gagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    |||||||||| |||||||||| | ||||||||||||||||||| ||||||||    
T  2446359 gagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 2446308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 127
Target Start/End: Original strand, 20335815 - 20335907
Alignment:
Q  35 aaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    ||||||||||||  ||||||||||| ||||||||  |  | |||||||||| |||||||||| | ||||||   |||||||||| ||||||||    
T  20335815 aaattgacatcggtgagaatcgaacctgagacctcgaggaggagcacactcccaagtcccaagccaatacctctagaccaacccaagtgggtt 20335907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 106
Target Start/End: Complemental strand, 42712061 - 42711979
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaatacca 106  Q
    |||| |||||||||||||||    |||||||||||||||||||||| |  | |||||||||| || || |||| |||||||||    
T  42712061 ttagcccacctaaattgacactagggagaatcgaacatgagaccttgaggaggagcacactcccatgtaccaagctaatacca 42711979  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 106
Target Start/End: Original strand, 24438245 - 24438302
Alignment:
Q  49 gagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaatacca 106  Q
    ||||||||||  ||| ||||||| ||||||||||||| |||||||||| | |||||||    
T  24438245 gagaatcgaatctgaaaccttaagaaagagcacactcccaagtcccaaaccaatacca 24438302  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 49 - 133
Target Start/End: Complemental strand, 43215262 - 43215178
Alignment:
Q  49 gagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggttctttgt 133  Q
    ||||||||||| ||||||||| |  | ||||||||||  | ||||||| | |||||||  |||||||||| |||||||| |||||    
T  43215262 gagaatcgaacctgagaccttgaggaggagcacactccgaggtcccaagccaataccactagaccaacccaagtgggttttttgt 43215178  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 29 - 129
Target Start/End: Complemental strand, 26545938 - 26545838
Alignment:
Q  29 ccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggttc 128  Q
    ||||||||||||| ||||| ||||||| ||| ||||||||  | || |||||||||  ||  |||||| ||||||||| || |||||||| |||||||||    
T  26545938 ccacctaaattgatatcgaagagaatcaaacttgagacctcgagaaggagcacacttccagatcccaagctaataccaccaaaccaacccaagtgggttc 26545839  T
Q  129 t 129  Q
    |    
T  26545838 t 26545838  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 31573614 - 31573656
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagac 66  Q
    |||||||||||||||||||||||| ||||||||||| ||||||    
T  31573614 ttagtccacctaaattgacatcgaagagaatcgaacctgagac 31573656  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 34 - 127
Target Start/End: Complemental strand, 19016124 - 19016031
Alignment:
Q  34 taaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    ||||||| || || |||||||| ||| ||||||||  |  | |||||||||| |||||| ||| | ||||||||||||||||||| ||||||||    
T  19016124 taaattggcaccggggagaatcaaacttgagacctcgaggaggagcacactcccaagtctcaagccaataccatcagaccaacccaagtgggtt 19016031  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 21213867 - 21213778
Alignment:
Q  29 ccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccc 118  Q
    |||||||||||| || || |||||||||||| |||||||| ||  | || ||||||| || ||||||| | ||||||| |||||||||||    
T  21213867 ccacctaaattggcaccggggagaatcgaacctgagacctcaaggaggaacacactcccaggtcccaagccaataccaccagaccaaccc 21213778  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 128
Target Start/End: Original strand, 42327368 - 42327472
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| ||||| |||||| || ||| ||||||||||| ||||||||| |  | |||||||||| || ||||||| | |||||||  || ||||||| ||||    
T  42327368 ttagcccacccaaattggcaccgaagagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaagccaataccactaggccaacccaagtg 42327467  T
Q  124 ggttc 128  Q
    |||||    
T  42327468 ggttc 42327472  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 29197349 - 29197452
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| |||||||||||| || || | ||||||||||||||||| | ||  | |||||||||| ||||||||||   ||||||| ||  ||||||| ||||    
T  29197349 ttagcccacctaaattggcaccgggaagaatcgaacatgagacatcaaggaggagcacactcccaagtcccaagtcaataccaccaagccaacccaagtg 29197448  T
Q  124 ggtt 127  Q
    ||||    
T  29197449 ggtt 29197452  T

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Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 127
Target Start/End: Complemental strand, 37480154 - 37480075
Alignment:
Q  48 ggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    |||||||||||| ||||||||| |  | |||||||||| || ||||||| | ||||||| ||| ||||||| ||||||||    
T  37480154 ggagaatcgaacctgagaccttgaggaggagcacactctcaggtcccaagccaataccaccaggccaacccaagtgggtt 37480075  T

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Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 128
Target Start/End: Complemental strand, 38551862 - 38551767
Alignment:
Q  33 ctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggttc 128  Q
    ||||||| ||||||  ||||||||||||  ||||||||| ||||||||||||| ||| |  |||   |||||||| |||||||||| |||| ||||    
T  38551862 ctaaattaacatcggagagaatcgaacacaagaccttaagaaagagcacactcccaaatttcaaatcaataccattagaccaacccaagtgagttc 38551767  T

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Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 116
Target Start/End: Complemental strand, 24191931 - 24191849
Alignment:
Q  34 taaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaac 116  Q
    |||||||||| || |||||||||| ||||||| || ||  | |||||||||| || ||||||| | ||||||||||| |||||    
T  24191931 taaattgacaccggggagaatcgatcatgagatctcaaggaggagcacactctcaggtcccaagccaataccatcaggccaac 24191849  T

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Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 127
Target Start/End: Complemental strand, 29503368 - 29503271
Alignment:
Q  29 ccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    |||| |||||||||| || |||||||||||| ||||||||| |  | |||||||||| || ||||||| | |||||||  || ||||||| ||||||||    
T  29503368 ccacttaaattgacaccg-ggagaatcgaacctgagaccttgaggaggagcacactcccaggtcccaaaccaataccactaggccaacccaagtgggtt 29503271  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 97
Target Start/End: Complemental strand, 33582076 - 33582003
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaat 97  Q
    |||||||||||||||||||||    ||||||||||| |||||||| ||  | |||||||||| || ||||||||    
T  33582076 ttagtccacctaaattgacattagagagaatcgaacctgagacctcaaggaggagcacactctcaggtcccaat 33582003  T

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Target: scaffold0258 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 15296 - 15399
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| |||||||||||| ||||   ||||||||||| ||||||||  |  | |||||||||| || ||||||| | ||||||| ||||||||||| ||||    
T  15296 ttagcccacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtg 15395  T
Q  124 ggtt 127  Q
    ||||    
T  15396 ggtt 15399  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 127
Target Start/End: Original strand, 8278300 - 8278351
Alignment:
Q  76 gagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    |||||||||| |||||||||| | ||||||||||||||||||| ||||||||    
T  8278300 gagcacactcccaagtcccaagccaataccatcagaccaacccaagtgggtt 8278351  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 128
Target Start/End: Complemental strand, 16773910 - 16773806
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| |||||||||||| ||||   ||||||||||| ||||||||  |  | |||||||||| || |||||||   ||||||| ||||||||| | ||||    
T  16773910 ttagcccacctaaattggcatcagagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagtcaataccaccagaccaactcaagtg 16773811  T
Q  124 ggttc 128  Q
    |||||    
T  16773810 ggttc 16773806  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 127
Target Start/End: Original strand, 10499082 - 10499185
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtg 123  Q
    |||| ||||| ||||||||||||  ||||||||||| |||||||| ||  ||||||| |||| ||  |||||| | ||||||| ||| ||||||| ||||    
T  10499082 ttagcccacccaaattgacatcggagagaatcgaacctgagacctcaaggaagagcagactcccagatcccaagccaataccaccaggccaacccaagtg 10499181  T
Q  124 ggtt 127  Q
    ||||    
T  10499182 ggtt 10499185  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 54990805 - 54990760
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagacctt 69  Q
    |||| |||||||||||| |||||||||||||||||| |||||||||    
T  54990805 ttagcccacctaaattgccatcgaggagaatcgaacctgagacctt 54990760  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 68
Target Start/End: Original strand, 49397514 - 49397558
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagacct 68  Q
    |||||||||||||||||||||| | || |||||||||||||||||    
T  49397514 ttagtccacctaaattgacatctaagataatcgaacatgagacct 49397558  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 35 - 71
Target Start/End: Original strand, 53593984 - 53594020
Alignment:
Q  35 aaattgacatcgaggagaatcgaacatgagaccttaa 71  Q
    ||||||||||| |||||||||||||||||||||||||    
T  53593984 aaattgacatcaaggagaatcgaacatgagaccttaa 53594020  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 115
Target Start/End: Original strand, 47236949 - 47237035
Alignment:
Q  29 ccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaa 115  Q
    ||||| |||||| || || |||||||||||||||||||||| || | |||||||||| |  ||||||| | ||||||| ||| ||||    
T  47236949 ccacccaaattggcaccggggagaatcgaacatgagaccttgaagaggagcacactcccgggtcccaaaccaataccaccaggccaa 47237035  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 17035089 - 17035044
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagacctt 69  Q
    |||||||||| ||||||| | ||||||||||||||| |||||||||    
T  17035089 ttagtccacccaaattgataccgaggagaatcgaacctgagacctt 17035044  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 30 - 127
Target Start/End: Complemental strand, 33549201 - 33549104
Alignment:
Q  30 cacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccctagtgggtt 127  Q
    ||||||||||| ||||   ||||||||||| ||||||||  |  | |||||||||| || ||||||| | ||||||| ||||||||||| ||||||||    
T  33549201 cacctaaattggcatccgagagaatcgaacctgagacctcgaggaggagcacactcccaggtcccaagccaataccaccagaccaacccaagtgggtt 33549104  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 12216847 - 12216752
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaataccatcagaccaaccct 119  Q
    |||| |||||||||||||||   | ||||||||||| ||||||||  | || ||||||| || || ||||||| | ||||||| ||||||||||||    
T  12216847 ttagcccacctaaattgacagtcaagagaatcgaacctgagacctcgagaaggagcacattcgcaggtcccaaaccaataccaccagaccaaccct 12216752  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 96
Target Start/End: Complemental strand, 12633112 - 12633040
Alignment:
Q  24 ttagtccacctaaattgacatcgaggagaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaa 96  Q
    ||||||||| ||||||||||| |  ||||||||||||||||| ||  || | |||||||||| ||| ||||||    
T  12633112 ttagtccacttaaattgacattggagagaatcgaacatgagatctcgaagaggagcacactcccaaatcccaa 12633040  T

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Target: scaffold0101 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0101
Description:

Target: scaffold0101; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 43332 - 43387
Alignment:
Q  51 gaatcgaacatgagaccttaaaaaagagcacactcacaagtcccaatctaatacca 106  Q
    ||||||||||||||||||||| || || ||||||| |||||||||| | |||||||    
T  43332 gaatcgaacatgagaccttaagaaggaacacactcccaagtcccaagccaatacca 43387  T

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