View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18787_high_7 (Length: 423)
Name: NF18787_high_7
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 16 - 168
Target Start/End: Complemental strand, 27510428 - 27510276
Alignment:
| Q |
16 |
atcattaatggcatcaaaactatatcatggtcatggttcgtcggctttaagaactaaaattgtgatataatgtttgctaattggtgtactaaccttataa |
115 |
Q |
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| T |
27510428 |
atcattaatggcatcaaaactatatcatggtcatggttcgtcggctttaagaacaaacattgtggtataatgtttgctaattggtgtactcaccttatag |
27510329 |
T |
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| Q |
116 |
cttgcatgcttagagtttgagtcttgtttttaaatggaagtaaatcgggttgt |
168 |
Q |
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| T |
27510328 |
cttggatgcttagagtttgagtcttgtttgtaaatggaagtaaatcgggttgt |
27510276 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 389
Target Start/End: Complemental strand, 27509690 - 27509648
Alignment:
| Q |
347 |
tttacaaaccacaacactatacagctgattgtagaagatatat |
389 |
Q |
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| T |
27509690 |
tttacaaatcacaacattatacagccgattgtagaagatatat |
27509648 |
T |
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