View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18787_low_10 (Length: 334)
Name: NF18787_low_10
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 63 - 326
Target Start/End: Original strand, 235421 - 235685
Alignment:
| Q |
63 |
tttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
162 |
Q |
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| T |
235421 |
tttatcaaccacataaggctggcctttgaaaacacggatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
235520 |
T |
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| Q |
163 |
actactggttcttctccagtacagttcaatgagccgacaatgataggg-ttttttccatgggacatgacagcgaccacttttttaggattgaagtggctg |
261 |
Q |
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| T |
235521 |
actactggttcttctccagtacagttcaacgagccgacaatgatagggtttttttccatgggacatgacagcgaccactattttaggattgaagtggctg |
235620 |
T |
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| Q |
262 |
acgacatggccatcgagtgaggatggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
326 |
Q |
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| T |
235621 |
acgacatggccatcgggtgaggacggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
235685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 8814245 - 8814023
Alignment:
| Q |
1 |
aaagatacagcaactaaccggacagtggaatcatcaggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaa |
100 |
Q |
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| T |
8814245 |
aaagattcagccactaactgaacagttgagtcatccggtccaacagtaacagtctgtccagttttgtctaccacataacactgacctttgaaagcacgga |
8814146 |
T |
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| Q |
101 |
tgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaacactac---tggttcttctccagtacagttcaatgagcc |
197 |
Q |
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| T |
8814145 |
tatctccaaagtagactgacatttcaggaataaacttccaattctcatcgccgcatttgaacactaccagttgttcttctcctttacagttaaatgaggc |
8814046 |
T |
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| Q |
198 |
gacaatgatagggttttttccat |
220 |
Q |
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| T |
8814045 |
gacgatgataggtttatttccat |
8814023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 42 - 170
Target Start/End: Complemental strand, 251242 - 251114
Alignment:
| Q |
42 |
aacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaa |
141 |
Q |
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| T |
251242 |
aacagtaactgtccgtccagtattgtctaccgcataaggtcggcctttgaaaacacaaatgtctccaaaataagccgacatgttaggtatagccttccaa |
251143 |
T |
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| Q |
142 |
ttctcatcgccacatttcaacactactgg |
170 |
Q |
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| T |
251142 |
ttctcatcaccgcatttgaacactactgg |
251114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 247088 - 247267
Alignment:
| Q |
1 |
aaagatacagcaactaaccggacagtggaatcatca---ggacaaacagtaacagtccgcccagttttatcaaccacataaggctggcctttgaaaacac |
97 |
Q |
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|||||| |||||||||||||||||||||||||||| || | || ||| |||| |||||||| || ||| ||||||| ||||||||||||||| |
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| T |
247088 |
aaagattcagcaactaaccggacagtggaatcatcctccggtccaaatccaactgtccatccagttttgtctaccgcataaggtcggcctttgaaaacac |
247187 |
T |
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| Q |
98 |
gaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaacactactggttcttct |
177 |
Q |
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||||||||||||||| ||||||| ||| ||| |||||||||||||| || |||||||||| | |||||| |||| |
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| T |
247188 |
aaatgtctcctaaataaaccgacatgtgaggtatagccttccaattctcatcaccgcatttcaacaatgctggttgttct |
247267 |
T |
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