View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18787_low_12 (Length: 315)
Name: NF18787_low_12
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 24 - 301
Target Start/End: Original strand, 33228418 - 33228692
Alignment:
| Q |
24 |
gaaatatttgtctattaaacatgtcaagtataaataggggaagcacctagcagaaattaagcaaggtgagataattaatttgctaattacttatatcaaa |
123 |
Q |
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| T |
33228418 |
gaaatatttgtctgttaaacatgtcaagtataaatagaggaagcacctatcagaaattaagcaaggtgagataattaatttcctaattacttatatcaaa |
33228517 |
T |
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| Q |
124 |
tcttattaatttataaacaaatcatcaccatgtccactgcattgtcctcctataatgtaccaatcagtggcactacgacccaaaagaatgatacctccca |
223 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33228518 |
tcttattaatttataaacaaatcatcaccatgtccactgcattg---tcctataatgtaccaatcagtggcactacgacccaaaagaatgatacctccca |
33228614 |
T |
|
| Q |
224 |
acaacagaaatctcagctccctaatccctttaagcttgaggatattgatatccttaacaaagtttatctcacccatgt |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33228615 |
acaacagaaatctcagctccctaatccctttaagcttgaggatattgaaatccttaacaaagtttatctcacccatgt |
33228692 |
T |
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