View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18787_low_14 (Length: 300)
Name: NF18787_low_14
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_low_14 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 300
Target Start/End: Original strand, 52631349 - 52631641
Alignment:
| Q |
1 |
caggattttcactttaaagattttgtacgaaagccaatttgcagaaatgagataaaagaagattcttgctgctcggtctcactttcttctctctagctag |
100 |
Q |
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| T |
52631349 |
caggattttcactttaaagattttgtacgaaagccaatttgcagaaatgagataaaagaagattcttgctgctcggtctcactttcttctctctagctag |
52631448 |
T |
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| Q |
101 |
ctaccttacatttctttctttttaatctctatagtataggtgcaatttagtgaggagtatcttcttgaggaacgagtatattatatatatgtcagaaaga |
200 |
Q |
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| T |
52631449 |
ctaccttagatttctttctttttaatctctatagtataggtgcaatttagtgaggagtatcttcttgaggaacgag-------tatatatgtcagaaaga |
52631541 |
T |
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| Q |
201 |
ataaaagaaaagaaagtaagtgtggtgtgactgttggttgtgaattatgtgatgaatgggagtccgagtcataactctgtgtgtgtctcggatttcagat |
300 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52631542 |
ataaaagaaaagaaagaaagtgtggtgtgactgttggttgtgaattatgtgatgaatgggagtccgagtcataactctgtgtgtgtctcggatttcagat |
52631641 |
T |
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