View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18787_low_2 (Length: 563)
Name: NF18787_low_2
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 546
Target Start/End: Complemental strand, 30173914 - 30173361
Alignment:
| Q |
1 |
tccaagaatatcttgtaaaagaacaagtgaatcatgtaaatatttatatacctgatggaatctcggatgaacttttccatttagatttgcaaattgcgga |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30173914 |
tccaataatatcttgtaaaagaacaagtgaatcatgtaaatatgtatatacctgatggaatctcggatgaactcttccatttagatttgcaaattgcgga |
30173815 |
T |
|
| Q |
101 |
attgaagccaagattcactaatcgatcgcatatttctgtaagcaaacatttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30173814 |
attgaagccaagattcactaatcgatcgcatatttctgtaagcaaacatttccggcagctcaccaccggttgccggcacaagcatagcatctcagacatg |
30173715 |
T |
|
| Q |
201 |
ttcaattctctcatagcctcctttatagcttgcctaacctttgtctcacctgagctagttctgcacaaagttgcctacaaatggaaac--------ataa |
292 |
Q |
| |
|
|| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || |
|
|
| T |
30173714 |
tttatttctctcatagcctcctttgtagcttgcctaacctttgtctcacctgagctagttctacacaaagttgcctacaaatggaaacaagaaaagaaaa |
30173615 |
T |
|
| Q |
293 |
ataaaaattagtcactttactaatggtcattagtgtannnnnnnctaattggatat-aattaaattagtaatctaccttgagaagttggtcttgttcttc |
391 |
Q |
| |
|
||||||||||| |||| |||| ||||| |||| | ||| ||||| || |||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
30173614 |
gaaaaaattagtctttttattaatagtcatgagtgca-ttttttctatttggacataaattaaattaataatctaccttgagaagttggtcttgttcctc |
30173516 |
T |
|
| Q |
392 |
ccagaaagctttannnnnnncaatagtacaaatgctatcaccatcttcttcatcgtcgatttcctcatcattaccggaatttgatgaatttccggatgaa |
491 |
Q |
| |
|
||||||||||||| ||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30173515 |
ccagaaagctttatttttttcaatagtgcaaacgctatcctcatcttcttcatcgtcgatttcctcatcattaccggaatttgatgaattttcggatgaa |
30173416 |
T |
|
| Q |
492 |
tcttggaattcctcccaaaatccaaaaactgtgtcagcaaaactgacctcgtcgg |
546 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
30173415 |
tcttggaattcctcccaaaatccaaaaactgtgtcagcaaaactgacctcatcgg |
30173361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 1e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 148
Target Start/End: Complemental strand, 12360133 - 12359999
Alignment:
| Q |
14 |
tgtaaaagaacaagtgaatcatgtaaatatttatatacctgatggaatctcggatgaacttttc-catttagatttgcaaattgcggaattgaagccaag |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||||||| | |
|
|
| T |
12360133 |
tgtaaaagaacaagtgaatcatgtaaatatgtatatacctgatggaatctcggatgaactaccctaatttagatttgcaaattccggaaatgaagcc-ac |
12360035 |
T |
|
| Q |
113 |
attcactaatcgatcgcatatttctgtaagcaaaca |
148 |
Q |
| |
|
||||| ||| |||| ||||||||| | |||||||| |
|
|
| T |
12360034 |
attcaacaattgatcacatatttctctgagcaaaca |
12359999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 399
Target Start/End: Complemental strand, 12359822 - 12359793
Alignment:
| Q |
370 |
tgagaagttggtcttgttcttcccagaaag |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
12359822 |
tgagaagttggtcttgttcttcccagaaag |
12359793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University