View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18787_low_8 (Length: 368)
Name: NF18787_low_8
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_low_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 23 - 352
Target Start/End: Original strand, 53699345 - 53699675
Alignment:
| Q |
23 |
gaaatattaaaagaaaaggtacaaagggtatttcaatctaccaatatcaaagtcgtttaattagaaggttacttcctaagctggcatacaatccagaaag |
122 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
53699345 |
gaaatattaaaataaaaggtacaaagggtatttcaatctaccaatatcaaagtcgtttaattagaaggtaacttcctaagctggcatacaatccagaaag |
53699444 |
T |
|
| Q |
123 |
ctaacacaccacttagagaaataattacttcaaatggagaactgaaaa-aatgacttttaaaggcgcaacgtacttgattttgcatttggtgtatgtgtt |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53699445 |
ttaacacaccacttagagaaataattacttcaaatggagaactgaaaaaaatgacttttaaaggcgcaacgtacttgattttgcatttggtgtatgtgtt |
53699544 |
T |
|
| Q |
222 |
accattgttaatttgttatgaagcagaaaattacgtgttccccacttaaaaaacacaaaatggaaagctatatgcctatatctattatagtgctgttgat |
321 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53699545 |
accattgttaatttgttatgaagcagaaaattacgtgttccccacttaaaaaacacaaaatggaaagctatatgcctatatctattatagtgctgttgat |
53699644 |
T |
|
| Q |
322 |
attacttacattactttttccactataacta |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
53699645 |
tttacttacattactttttccactataacta |
53699675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University