View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18787_low_9 (Length: 346)
Name: NF18787_low_9
Description: NF18787
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18787_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 14 - 328
Target Start/End: Original strand, 5982654 - 5982968
Alignment:
| Q |
14 |
atatcgtccaccaccaatgccttggtaccaacctcaacatgctggatatgcaataccaccaccaatgtatccaggatcagggcctctacatggttacaat |
113 |
Q |
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| T |
5982654 |
atatcgtccaccaccaatgccttggtaccaacctcaacatgctggatatgcaataccaccacaaatgtatccaggatcagggcctctacatggttacaat |
5982753 |
T |
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| Q |
114 |
ggatatagtcatcccatgggaccacatggttacaatggatatggtcatctcatgggaccggattatggacattatggttcaaggatgccaatgtcaagac |
213 |
Q |
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| T |
5982754 |
ggatatagtcatcccatgggaccacatggttacaatggatatggtcatctcatgggaccggattatggacattatggttcaaggatgccaatgtcaagac |
5982853 |
T |
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| Q |
214 |
ccaatcccatgatccactacaacagttatgctgacaattatcgctatactatgtagatgaagtatgtcaaagttgttggctacaagaacttactatggtt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5982854 |
ccaatcccatgatccactacaacagttatgctgacaattatcgctatactatgtagatgaagtatgtcaaagttgttggctacaagaacttactatggtt |
5982953 |
T |
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| Q |
314 |
tacttttcagactat |
328 |
Q |
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| T |
5982954 |
tacttttcagactat |
5982968 |
T |
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