View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18788_high_10 (Length: 229)
Name: NF18788_high_10
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18788_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 172; Significance: 1e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 32 - 219
Target Start/End: Complemental strand, 4885144 - 4884957
Alignment:
| Q |
32 |
taatcattctttatatgtaacggttttccctataattagcctaaagtattaagtactgagaatataccaaattgaccaaatttacttcgttttctcagtc |
131 |
Q |
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| T |
4885144 |
taatcattctttatatgtaacggttttccctataatttgcctaaagtattaagtactgagaatataccaaattgaccaaatttacttcgttttctcagtc |
4885045 |
T |
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| Q |
132 |
aacacagaaaatccatcttccattaatatatataaactatattctctcttgttattcatttctttgttcattgtcaacacaggttctg |
219 |
Q |
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| T |
4885044 |
aacacagaaaatccatcttccattaatatatataaactatattctctcttgttattcatttctttgttcgttgtcaacatgggttctg |
4884957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 51
Target Start/End: Complemental strand, 4885173 - 4885142
Alignment:
| Q |
20 |
atctgtaatttataatcattctttatatgtaa |
51 |
Q |
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| T |
4885173 |
atctgtaatttataatcattctttatatgtaa |
4885142 |
T |
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