View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18788_high_5 (Length: 337)
Name: NF18788_high_5
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18788_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 16471094 - 16470903
Alignment:
| Q |
1 |
acactgaaagctgtgaatgagagcaaattatttactgttatgtattgactagtttaaatcaatacatatttttgggcacaacaacgaatccttttgtcga |
100 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16471094 |
acaccgaaagctgtgaatgagagcaaattatttactgttatgtattgaccagtttaagtcaatacatatttttgggcacaacaacgaatccttttgtcga |
16470995 |
T |
|
| Q |
101 |
catttttgtcatctaacaattttggacactttggttagttgaggtctaaaggatagaccatgcatgctatatttaaccaactccatttgctt |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16470994 |
catttttgtcatctaacaattttggacactttggttagttgaggtctaaaggatagaccatgcatgctatatttaaccaactccatttgctt |
16470903 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 16470840 - 16470773
Alignment:
| Q |
255 |
tgtatccttcaattttggaatttctatggggcgtgtggggtttgagagaagagtctatgtgttctttt |
322 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16470840 |
tgtatccttcaattttggaatttctatggggcgtgtggggtttgagagaagagtctatgtgttctttt |
16470773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University