View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18788_low_11 (Length: 318)
Name: NF18788_low_11
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18788_low_11 |
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| [»] scaffold0248 (1 HSPs) |
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Alignment Details
Target: scaffold0248 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 6 - 303
Target Start/End: Original strand, 12475 - 12771
Alignment:
| Q |
6 |
agcaccacaagttcctatcacaattcctactatcaatcaccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatc |
105 |
Q |
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| T |
12475 |
agcaccacaaattcctatcacaattcctacaatcaatcaccttctcaatctttccaatttatgcagagaattcataaaacgcttcaacaatctcagcatc |
12574 |
T |
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| Q |
106 |
accactccaaatcgaaaggttgttgcctttaggattctaggcaacaactgccatatattttgtagcttgcaataatctagaattctaggcaatgcattga |
205 |
Q |
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| T |
12575 |
accactccaaatcgaa-ggttgttgcctctaggattctaggcaacaacagccatatattttgtagcttgcaataatctaggattctaggcaatgcattaa |
12673 |
T |
|
| Q |
206 |
gaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatcacaggggatgatttggcatgtacc |
303 |
Q |
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| T |
12674 |
gaaaattcttttgtggattagatataaaacttgcatattcaggatcgctttattctggtattaatcttctcatcataggggacgatttggcatgtacc |
12771 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 32798210 - 32798326
Alignment:
| Q |
188 |
ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatc-acagggg |
286 |
Q |
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| T |
32798210 |
ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcgctttcttctggtattaatcttctcatcaacagggg |
32798309 |
T |
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| Q |
287 |
atgatttggcatgtacc |
303 |
Q |
| |
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||||||||||||||||| |
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| T |
32798310 |
atgatttggcatgtacc |
32798326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 188 - 303
Target Start/End: Original strand, 32803863 - 32803979
Alignment:
| Q |
188 |
ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatc-acagggg |
286 |
Q |
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||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| ||||||||||| || ||||||||||||||| ||| ||||||| |
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| T |
32803863 |
ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcgctttcttctggtattaatcttctcatcaacagggg |
32803962 |
T |
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| Q |
287 |
atgatttggcatgtacc |
303 |
Q |
| |
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||||||||||||||||| |
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| T |
32803963 |
atgatttggcatgtacc |
32803979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 188 - 303
Target Start/End: Complemental strand, 32307701 - 32307585
Alignment:
| Q |
188 |
ttctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatc-acagggg |
286 |
Q |
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||||||||||||||||||||||| | |||||||||| | |||||||||||||||||| |||||| |||| || ||||||| ||||||| ||| ||||||| |
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| T |
32307701 |
ttctaggcaatgcattgagaaaactcttttgtggatcatatataaaacttgcatatttaggatcactttcttctggtatttatcttctcatcaacagggg |
32307602 |
T |
|
| Q |
287 |
atgatttggcatgtacc |
303 |
Q |
| |
|
||||||||||||||||| |
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| T |
32307601 |
atgatttggcatgtacc |
32307585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Complemental strand, 32307784 - 32307720
Alignment:
| Q |
43 |
caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac |
107 |
Q |
| |
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| T |
32307784 |
caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac |
32307720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 32798127 - 32798191
Alignment:
| Q |
43 |
caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac |
107 |
Q |
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| T |
32798127 |
caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac |
32798191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 43 - 107
Target Start/End: Original strand, 32803780 - 32803844
Alignment:
| Q |
43 |
caccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcac |
107 |
Q |
| |
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| T |
32803780 |
caccatctcaatctttccaatttcagcagagaattcataaaacgcttcaacaatctcagcatcac |
32803844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 7436803 - 7436907
Alignment:
| Q |
17 |
ttcctatcacaattcctactatcaatcaccttctcaatccttctaatttctgttgagaattcataaaacgcttcaacaatctcagcatcaccactccaaa |
116 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| ||| |||||| | ||||||| |||||| ||||| ||||||||||||||||| |||||| |
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| T |
7436803 |
ttcctatcacaattcctactatcaatcaccttctcaatctttccaatttcagcagagaattgataaaatgcttcgacaatctcagcatcacccgtccaaa |
7436902 |
T |
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| Q |
117 |
tcgaa |
121 |
Q |
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||||| |
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| T |
7436903 |
tcgaa |
7436907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 297
Target Start/End: Original strand, 7436998 - 7437106
Alignment:
| Q |
190 |
ctaggcaatgcattgagaaaattattttgtggattagatataaaacttgcatattcaggatcgctttattttggtattaatcttcttatc-acaggggat |
288 |
Q |
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|||||||||||||||||||||| |||||||||| |||||| ||||||| ||||||||| || | | || ||| ||||||||||| ||| || ||||| |
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| T |
7436998 |
ctaggcaatgcattgagaaaatacttttgtggatcagatatgaaacttgtatattcagggtcattctcttctggaattaatcttctcatcaacgggggac |
7437097 |
T |
|
| Q |
289 |
gatttggca |
297 |
Q |
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||||||||| |
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| T |
7437098 |
gatttggca |
7437106 |
T |
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