View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18788_low_12 (Length: 302)
Name: NF18788_low_12
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18788_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 105 - 284
Target Start/End: Original strand, 441244 - 441423
Alignment:
| Q |
105 |
gcctccctttcctttacactttccaccatgaagtggctctaaggtcattttccttccacttaaaactgcataatatttcacaattaacttaaataaccat |
204 |
Q |
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| T |
441244 |
gcctccctttcctttacactttccaccatgaagtggctctaaggtcattttccttccacttaaaactgcataatatttcacaattaacttaaataaccat |
441343 |
T |
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| Q |
205 |
cattcacattatatatcaatcggattaaaataatacacataaagagatcaaagttaccatattcttgcttgtcacactcc |
284 |
Q |
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| T |
441344 |
cattcacattatatatcaatcggattaaaataatacacataaagagatcaaagttaccatattcttgcttgtcacactcc |
441423 |
T |
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Target: chr3; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 124 - 210
Target Start/End: Original strand, 453601 - 453687
Alignment:
| Q |
124 |
tttccaccatgaagtggctctaaggtcattttccttccacttaaaactgcataatatttcacaattaacttaaataaccatcattca |
210 |
Q |
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| T |
453601 |
tttccaccattaagtggctccaaaatcaatttccttccacttataactgcataatattgcacaattgacttaaataactatcattca |
453687 |
T |
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