View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18788_low_2 (Length: 654)

Name: NF18788_low_2
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18788_low_2
NF18788_low_2
[»] chr4 (1 HSPs)
chr4 (11-639)||(40866596-40867224)


Alignment Details
Target: chr4 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 11 - 639
Target Start/End: Complemental strand, 40867224 - 40866596
Alignment:
Q  11 caaaggaaccaaatccacatgcaccagctgaaatgagttcaaaagagcataaatataagagagaacatgtttacaaatatcatttcatgtttgcattttt 110  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  40867224 caaaggaaccaaatccacatgcaccagctgaaatgaattcaaaagagcataaatataaaagagaacatgtttacaaatatcatttcatgtttgcattttt 40867125  T
Q  111 gttattttttatcagttttcttactatctgtgccgttttcttcagagtttgggtaaaatgatgcatgagattgaacaaaacaatcggtgcatgaagtatc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40867124 gttattttttatcagttttcttactatctgtgccgttttcttcagagtttgggtaaaatgatgcatgagattgaacaaaacaatcggtgcatgaagtatc 40867025  T
Q  211 tgctagggtttgcatgaaaagaaaggtggcaatgagaacaaaacacaaaagagagagtgccatgtaggatagaatggataaagcagtcagaactcagaat 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40867024 tgctagggtttgcatgaaaagaaaggtggcaatgagaacaaaacacaaaagagagagtgccatgtaggatagaatggataaagcagtcagaactcagaat 40866925  T
Q  311 ggtaaagagagcttgtgatgcatgaagggaattggatttctactatttatagagaatctggtcaatgttaccaactttgacataccaaagatgaaaataa 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866924 ggtaaagagagcttgtgatgcatgaagggaattggatttctactatttatagagaatctggtcaatgttaccaactttgacataccaaagatgaaaataa 40866825  T
Q  411 aaactattcacatttggaataaagagtaattttgataccattgtctctggactactcacctagtctacatttgacattgaaaaccactttctgacctatc 510  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866824 aaactattcacatttggaataaagagtaattttgataccattgtctctggactactcacctagtctacatttgacattgaaaaccactttctgacctatc 40866725  T
Q  511 aaaattcccttttagatatgttttattctgtttatctgcaaatgatatttccacaccatttcctgtacataagtttaattctaagttagacccacaaaca 610  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40866724 aaaattcccttttatatatgttttattctgtttatctgcaaatgatatttccacaccatttcctgtacataagtttaattctaagttagacccacaaaca 40866625  T
Q  611 ctaatggatatggtccccttgcaacaact 639  Q
    |||||||||||||||||||||||||||||    
T  40866624 ctaatggatatggtccccttgcaacaact 40866596  T

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