View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18788_low_3 (Length: 535)
Name: NF18788_low_3
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18788_low_3 |
 | |
|
| [»] scaffold0009 (2 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 417; Significance: 0; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Complemental strand, 22990753 - 22990246
Alignment:
| Q |
1 |
cccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
22990753 |
cccccagccgtagcaggttagcaggccaggaacagcacctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgttacaaaaaa |
22990654 |
T |
|
| Q |
101 |
cataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22990653 |
cataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaacaaatccgaagcaaa |
22990554 |
T |
|
| Q |
201 |
nnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataa |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990553 |
aaaacaaaataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataa |
22990454 |
T |
|
| Q |
301 |
gagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttctt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22990453 |
gagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttctt |
22990354 |
T |
|
| Q |
401 |
aatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttcttaattcatagtactt |
497 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || || | ||||||||||||||||||||||||| | |
|
|
| T |
22990353 |
aatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttcttaattcatagtacat |
22990255 |
T |
|
| Q |
498 |
cctagctta |
506 |
Q |
| |
|
|||| |||| |
|
|
| T |
22990254 |
cctatctta |
22990246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 28948729 - 28949236
Alignment:
| Q |
1 |
cccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaa |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28948729 |
cccccaaccgtagcaggttagcaggccaggaacagcagctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaa |
28948828 |
T |
|
| Q |
101 |
cataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnn |
200 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
28948829 |
cataagaaatcatggcattacaaatatagcttatatataactagttaaaactgaaatatagagtttaaggaggataagtgaacaacaaatccgaagcaaa |
28948928 |
T |
|
| Q |
201 |
nnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
28948929 |
aaaacaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttatttgtacttcataa |
28949028 |
T |
|
| Q |
301 |
gagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttctt |
400 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28949029 |
gagtacttcatagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttctt |
28949128 |
T |
|
| Q |
401 |
aatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || | ||||||||||||||||||||||||| || |
|
|
| T |
28949129 |
aatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagattacttcttaattcatagtacatc |
28949228 |
T |
|
| Q |
499 |
ctagctta |
506 |
Q |
| |
|
|||||||| |
|
|
| T |
28949229 |
ctagctta |
28949236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 86 - 506
Target Start/End: Original strand, 22714557 - 22714979
Alignment:
| Q |
86 |
gaatgtcacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaa |
185 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
22714557 |
gaatgttacaaaaaacataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagtgaacaa |
22714656 |
T |
|
| Q |
186 |
caaatccgaagcnnnnnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagtt |
285 |
Q |
| |
|
|||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
22714657 |
caaatccgaagcaaaaaaacaaaataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagtt |
22714756 |
T |
|
| Q |
286 |
actggtacttcataagagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtactt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22714757 |
actggtacttcataagagtacttcatagttactagcactttttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtactt |
22714856 |
T |
|
| Q |
386 |
cctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatag-tac--atcctagcttagattacttct |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| || || | |||||||||||| |
|
|
| T |
22714857 |
cctagattacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactaatact-tcctagattacttct |
22714955 |
T |
|
| Q |
483 |
taattcatagtacttcctagctta |
506 |
Q |
| |
|
||||||||||||| ||||| |||| |
|
|
| T |
22714956 |
taattcatagtacatcctatctta |
22714979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 205 - 511
Target Start/End: Complemental strand, 22697172 - 22696864
Alignment:
| Q |
205 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt |
304 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
22697172 |
caacataagtgaaccataaatacgagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt |
22697073 |
T |
|
| Q |
305 |
acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt |
404 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
22697072 |
acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcaaagttaccggtacttcctagattacttcttaatt |
22696973 |
T |
|
| Q |
405 |
taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag |
502 |
Q |
| |
|
|||||||||| || |||||||||||||||||||||||| || | ||||||||||| | || | |||||||||||||||||||||||||||||||| |
|
|
| T |
22696972 |
taaagacaacagagcattacaacattaaagactaaacaaaatagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag |
22696873 |
T |
|
| Q |
503 |
cttacttcc |
511 |
Q |
| |
|
||| |||| |
|
|
| T |
22696872 |
gttaattcc |
22696864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 205 - 526
Target Start/End: Complemental strand, 46956859 - 46956533
Alignment:
| Q |
205 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt |
304 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
46956859 |
caacataagtgaacaaaaaatacaagcataattatcacacaacataagccttcattaaggtatagaaacattacataagttactagtacttcataatagt |
46956760 |
T |
|
| Q |
305 |
acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt |
404 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
46956759 |
acttcatagttactagcacttcttagattacttcctaattaaaaggcaaaacataacagtacttgatagttactagtacttcctagattacttcttaatt |
46956660 |
T |
|
| Q |
405 |
taaagacaacggaacattacaacattaaagacta---aacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcc |
499 |
Q |
| |
|
|||||| || |||||||||||||||||||||||| || |||||| | ||||||||| | || | ||||||||||||||||||||||||||| | |
|
|
| T |
46956659 |
taaagataatggaacattacaacattaaagactaaataatataacagtgcttcatagttactagtacttcctagattacttcttaattcatagtactttc |
46956560 |
T |
|
| Q |
500 |
tagcttacttcctagtcacacaggttc |
526 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
46956559 |
tagcttacttcctagtcacacaggttc |
46956533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 22703364 - 22703454
Alignment:
| Q |
1 |
cccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgt |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22703364 |
cccccagccgtagcaggttagcaggccaggaacagcacctgaagccgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgt |
22703454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 28949216 - 28949290
Alignment:
| Q |
452 |
ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc |
526 |
Q |
| |
|
||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
28949216 |
ttcatagtacatcctagcttagattgcttcttaactcatagtacttcctagcttacttcctagtcacataggttc |
28949290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 22714959 - 22715033
Alignment:
| Q |
452 |
ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc |
526 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
22714959 |
ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc |
22715033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 452 - 526
Target Start/End: Complemental strand, 22990266 - 22990192
Alignment:
| Q |
452 |
ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc |
526 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||| |
|
|
| T |
22990266 |
ttcatagtacatcctatcttagattacttcttaattcatagtacttcctaacttacttcctaatcacagaggttc |
22990192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 379; Significance: 0; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 506
Target Start/End: Original strand, 200345 - 200862
Alignment:
| Q |
1 |
cccccagccgtagcaggttagcaggccaggaacagcacctgaagtcgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgtcacaaaaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
200345 |
cccccagccgtagcaggttagcaggccaggaacagcacctgaagctgcaaccaaaccagccgcaaaaccataagaaacatgctttgaatgttacaaaaaa |
200444 |
T |
|
| Q |
101 |
cataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
|
|
| T |
200445 |
cataagaaatcatggcattgcaaatatagcttatatataactagttaaaactgaaatatatagtttatggaggataagtgaacaacaaatccgaagcaaa |
200544 |
T |
|
| Q |
201 |
nnnncaacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataa |
300 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
200545 |
aaaacaaaataagtgaaccaaaaatacgagcataattatcacacaacataagctttcattaagggatagaaacattacataagttactggtacttcataa |
200644 |
T |
|
| Q |
301 |
gagtacttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataac----------agtacttcatagttacaggtacttcctag |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
200645 |
gagtacttcatagttactagcacttcttagattaattcctaattgaaaggaaaaacataacagtacttcatagtacttcatagttacaggtacttcctag |
200744 |
T |
|
| Q |
391 |
attacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattc |
488 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || | |||||||||||||||||| |
|
|
| T |
200745 |
attacttcttaatttaaagacaacggaacattacaacattaaagactaaacataacagtacttcatagttactattacttcctagattacttcttaattc |
200844 |
T |
|
| Q |
489 |
atagtacttcctagctta |
506 |
Q |
| |
|
||||||| |||||||||| |
|
|
| T |
200845 |
atagtacatcctagctta |
200862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 452 - 526
Target Start/End: Original strand, 200842 - 200916
Alignment:
| Q |
452 |
ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctagtcacacaggttc |
526 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
200842 |
ttcatagtacatcctagcttagattacttcttaattcatagtacttcctagcttacttcctaatcacagaggttc |
200916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 122 - 526
Target Start/End: Complemental strand, 20087992 - 20087585
Alignment:
| Q |
122 |
aaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagcnnnnnnn-caacataagtgaacca |
220 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||||||||||| |||||||||| | | |||||||||||| |||| |||||||||||||||| |
|
|
| T |
20087992 |
aaatagagcttatatataaccagttaaaactgaaatatagagcttatggaggacaggtgaacaacaaatctgaaggaaaaaaaacaacataagtgaacca |
20087893 |
T |
|
| Q |
221 |
aaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagtacttcatagttactag |
320 |
Q |
| |
|
||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
|
|
| T |
20087892 |
aaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataatagtacttcatagttactag |
20087793 |
T |
|
| Q |
321 |
cacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatttaaagacaacggaaca |
420 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
20087792 |
tacttcttagattacttcctaattaaaaggcaaaacataacagtacttcatagttactagtactttctagattacttcttaatttaaagataacggaaca |
20087693 |
T |
|
| Q |
421 |
ttacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctagcttacttcctagtcac |
518 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| | || | ||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20087692 |
ttacaacattaaagactaaatataacagtacttcatagttactagtacttcctagattacttcttaattcataagacttcctagcttacttcctagtcac |
20087593 |
T |
|
| Q |
519 |
acaggttc |
526 |
Q |
| |
|
||| |||| |
|
|
| T |
20087592 |
acaagttc |
20087585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 205 - 511
Target Start/End: Complemental strand, 19646606 - 19646298
Alignment:
| Q |
205 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt |
304 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
19646606 |
caacataagtgaaccaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaatattacataagttactggtacttcataagagt |
19646507 |
T |
|
| Q |
305 |
acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt |
404 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
19646506 |
acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttaccggtacttcctagattacttcttaatt |
19646407 |
T |
|
| Q |
405 |
taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag |
502 |
Q |
| |
|
|||||||||| |||||||||||||||||||| ||||||||| | ||||||||||| | || | |||||||||||||||||||||||||||||||| |
|
|
| T |
19646406 |
taaagacaacagaacattacaacattaaagattaaacataagagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag |
19646307 |
T |
|
| Q |
503 |
cttacttcc |
511 |
Q |
| |
|
|||| |||| |
|
|
| T |
19646306 |
cttaattcc |
19646298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 205 - 511
Target Start/End: Complemental strand, 4344518 - 4344211
Alignment:
| Q |
205 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt |
304 |
Q |
| |
|
|||||||||||||| |||||||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
4344518 |
caacataagtgaacaaaaaatacaagcataattatcacacaacataagtcttcattaagggatagaaacattacataagttactagtacttcataagagt |
4344419 |
T |
|
| Q |
305 |
acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt |
404 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
4344418 |
acttcatagttactaccacttcttagattacttcctaattgaaaggaaaaacataacaatacttcaaagttactggtacttcctagattacttcttaatt |
4344319 |
T |
|
| Q |
405 |
taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag |
502 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||| | || | |||||||||||||||||||||||||||||||| |
|
|
| T |
4344318 |
taaagacaacgaaacatta-aacattaaagactaaacataacagtacttcatagttactagtacttcgtagattacttcttaattcatagtacttcctag |
4344220 |
T |
|
| Q |
503 |
cttacttcc |
511 |
Q |
| |
|
|||| |||| |
|
|
| T |
4344219 |
cttaattcc |
4344211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 122 - 197
Target Start/End: Complemental strand, 5928219 - 5928144
Alignment:
| Q |
122 |
aaatatagcttatatataactagttaaaactgaaatatagagtttatggaggataagagaacaacaaatccgaagc |
197 |
Q |
| |
|
||||| |||||||||| ||| | |||||||||||||||||||||||| ||||||||| | |||||||||| ||||| |
|
|
| T |
5928219 |
aaatagagcttatatagaaccacttaaaactgaaatatagagtttattgaggataagtgcacaacaaatctgaagc |
5928144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 98 - 126
Target Start/End: Complemental strand, 5928378 - 5928350
Alignment:
| Q |
98 |
aaacataagaaatcatggcattgcaaata |
126 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
5928378 |
aaacataagaaatcatggcattgcaaata |
5928350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 205 - 511
Target Start/End: Complemental strand, 22808392 - 22808084
Alignment:
| Q |
205 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
22808392 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaaaattacataagttactagtacttcataagagt |
22808293 |
T |
|
| Q |
305 |
acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt |
404 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||| | |||| |||| |||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
22808292 |
acttcatggttactaccacttcttagattacttcctaattgaaaagaaaaatataatagtacttcatagttactagtacttcctagattacttcttaatt |
22808193 |
T |
|
| Q |
405 |
taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttcctag |
502 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||| | || | ||||||||||||||||| |||||||||||||| |
|
|
| T |
22808192 |
taaagataacggaacattacaacattaaagactaaacataacaatacttcatagttactagtacttcatagattacttcttaatttatagtacttcctag |
22808093 |
T |
|
| Q |
503 |
cttacttcc |
511 |
Q |
| |
|
|||| |||| |
|
|
| T |
22808092 |
cttaattcc |
22808084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 2e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 205 - 498
Target Start/End: Original strand, 23362369 - 23362651
Alignment:
| Q |
205 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagctttcgttaagggatagaaacattacataagttactggtacttcataagagt |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||| ||| |
|
|
| T |
23362369 |
caacataagtgaaccaaaaatacgagcataattatcacacaacataagtcttcattaagggataaaaacattacataagttact-------------agt |
23362455 |
T |
|
| Q |
305 |
acttcatagttactagcacttcttagattacttcctaattgaaaggcaaaacataacagtacttcatagttacaggtacttcctagattacttcttaatt |
404 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23362456 |
acttcatggttactaccacttcttagattacttcctaattgaaaggaaaaacataacagtacttcatagttattagtacttcctagattacttcttaatt |
23362555 |
T |
|
| Q |
405 |
taaagacaacggaacattacaacattaaagactaaacataacaatacttcatagtacatccta--gcttagattacttcttaattcatagtacttc |
498 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | || | |||||||||||||||||||||||||||| |
|
|
| T |
23362556 |
taaagacaacggaacattacaacattaaagactaaacataacaatacttaatagttactagtacttcgtagattacttcttaattcatagtacttc |
23362651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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