View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18788_low_4 (Length: 500)

Name: NF18788_low_4
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18788_low_4
NF18788_low_4
[»] chr5 (4 HSPs)
chr5 (1-220)||(40797519-40797738)
chr5 (243-379)||(40797405-40797528)
chr5 (171-220)||(41612842-41612891)
chr5 (408-437)||(40797353-40797382)
[»] chr6 (5 HSPs)
chr6 (1-203)||(8848878-8849080)
chr6 (175-220)||(23158121-23158166)
chr6 (175-220)||(18763106-18763151)
chr6 (175-220)||(20014730-20014775)
chr6 (169-220)||(31575107-31575158)
[»] scaffold0022 (1 HSPs)
scaffold0022 (4-220)||(152747-152963)
[»] chr7 (7 HSPs)
chr7 (4-220)||(39700514-39700731)
chr7 (255-300)||(6015836-6015881)
chr7 (169-220)||(27260683-27260734)
chr7 (169-220)||(45623325-45623376)
chr7 (175-220)||(9334209-9334255)
chr7 (223-256)||(45623307-45623340)
chr7 (169-220)||(26643043-26643095)
[»] chr4 (4 HSPs)
chr4 (119-220)||(43591268-43591368)
chr4 (169-220)||(581746-581797)
chr4 (171-220)||(581439-581488)
chr4 (223-256)||(43592211-43592244)
[»] chr2 (2 HSPs)
chr2 (148-216)||(28381778-28381846)
chr2 (257-297)||(5668242-5668282)
[»] chr8 (2 HSPs)
chr8 (157-220)||(22928113-22928177)
chr8 (257-290)||(11405927-11405960)
[»] chr3 (2 HSPs)
chr3 (164-215)||(22159166-22159218)
chr3 (169-220)||(6509911-6509962)
[»] chr1 (2 HSPs)
chr1 (255-290)||(12252568-12252603)
chr1 (156-220)||(15718776-15718841)


Alignment Details
Target: chr5 (Bit Score: 196; Significance: 1e-106; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 220
Target Start/End: Complemental strand, 40797738 - 40797519
Alignment:
Q  1 tggcttctctgatgagttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  40797738 tggcttctctgatgagttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaagggag 40797639  T
Q  101 ttttcaaactgatgttcagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagtt 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||    
T  40797638 ttttcaaactgttgttcagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacgctaaataaaagtt 40797539  T
Q  201 ttctctttattaataggtat 220  Q
    ||||||||||||||| ||||    
T  40797538 ttctctttattaataagtat 40797519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 243 - 379
Target Start/End: Complemental strand, 40797528 - 40797405
Alignment:
Q  243 taataggtatagatgataaacaactttgaccccacttattgaaatttcggaatccatcgttctggtactttctttgtactattgtttaaggagtttaatt 342  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||             | |  ||||||||||||||||||||||||    
T  40797528 taataagtatagatgataaaccactttgaccccacttattgaaatttcggaatccgtc-------------cctgatactattgtttaaggagtttaatt 40797442  T
Q  343 agtgttggtgtttgagcatttgaccttttttgaaagg 379  Q
    |||||||||||||||||||||||||||||||||||||    
T  40797441 agtgttggtgtttgagcatttgaccttttttgaaagg 40797405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 41612891 - 41612842
Alignment:
Q  171 aaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||||||| ||||| ||  ||||||||||||||||    
T  41612891 aaagaaaataggctacaccaaaccaaagtattgcctttattaataggtat 41612842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 408 - 437
Target Start/End: Complemental strand, 40797382 - 40797353
Alignment:
Q  408 ggttattaatttattccattggatacttat 437  Q
    ||||||||||||||||||||||||||||||    
T  40797382 ggttattaatttattccattggatacttat 40797353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 183; Significance: 9e-99; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 9e-99
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 8848878 - 8849080
Alignment:
Q  1 tggcttctctgatgagttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggag 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  8848878 tggcttctctgatgagttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacaaaagaaggatttgaggggag 8848977  T
Q  101 ttttcaaactgatgttcagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagtt 200  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||||||||||    
T  8848978 ttttcaaactgttgttcagttttaactggcaaattgggaaattctcataaaaaaagaaggataatttgggaaagaaattaggctacaccaaacaaaagtt 8849077  T
Q  201 ttc 203  Q
    |||    
T  8849078 ttc 8849080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 23158166 - 23158121
Alignment:
Q  175 aaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||||||||| || |||||||||||||||||    
T  23158166 aaaataggctacaccaaacaaaagtattgtctttattaataggtat 23158121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 18763151 - 18763106
Alignment:
Q  175 aaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    |||||||||||||||||||||||||  | |||||||||||||||||    
T  18763151 aaaataggctacaccaaacaaaagtactgtctttattaataggtat 18763106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 20014775 - 20014730
Alignment:
Q  175 aaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||||||||| ||  ||||||||||||||||    
T  20014775 aaaataggctacaccaaacaaaagtattgcctttattaataggtat 20014730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 31575107 - 31575158
Alignment:
Q  169 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||| ||||| ||||| ||  ||||||||||||||||    
T  31575107 ggaaagaaaataggctacatcaaaccaaagtattgcctttattaataggtat 31575158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 117; Significance: 2e-59; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 4 - 220
Target Start/End: Original strand, 152747 - 152963
Alignment:
Q  4 cttctctgatgagttgatgatcgtaactcctctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggagttt 103  Q
    |||| ||||||| |||||||||||||||||||||||||  |||||||||||| |||||||||||| | |||||||||  ||   || ||| |||||||||    
T  152747 cttccctgatgaattgatgatcgtaactcctctctttcaacctatttctctcggtcataaaagacttgcggtttacaacaggtagaattggggggagttt 152846  T
Q  104 tcaaactgatgttcagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttc 203  Q
     ||||||| | |||| ||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||| |||||     
T  152847 ccaaactgtttttcaattttaacgggcaaattgggaaattctcataaaaaaagaagggtaatttaggaaagaaaataggctacacgaaacaaatgttttg 152946  T
Q  204 tctttattaataggtat 220  Q
     ||||||||||||||||    
T  152947 cctttattaataggtat 152963  T

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Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 39700731 - 39700514
Alignment:
Q  4 cttctctgatgagttgatgatcgtaactcc-tctctttcgccctatttctctcagtcataaaagacatacggtttacagaagaaggatttgaggggagtt 102  Q
    |||| ||||||| ||||||||||||||||| ||||||||  |||||||||||| |||||||||||| | |||||||||  ||   || ||| ||||||||    
T  39700731 cttccctgatgaattgatgatcgtaactccatctctttcaacctatttctctcggtcataaaagacttgcggtttacaacaggtagaattggggggagtt 39700632  T
Q  103 ttcaaactgatgttcagttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagtttt 202  Q
    | ||||||| | |||| |||| || ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39700631 tccaaactgtttttcaattttgacgggcaaattgggaaattctcataaaaaaagaagggtaatttaggaaagaaaataggctacaccaaacaaaagtttt 39700532  T
Q  203 ctctttattaataggtat 220  Q
      ||||||||||||||||    
T  39700531 acctttattaataggtat 39700514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 6015836 - 6015881
Alignment:
Q  255 atgataaacaactttgaccccacttattgaaatttcggaatccatc 300  Q
    ||||||||||| |||||||||||||||||||||||| | |||||||    
T  6015836 atgataaacaattttgaccccacttattgaaatttctggatccatc 6015881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 27260683 - 27260734
Alignment:
Q  169 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||| ||||||||||||||||||   |||||||| ||||||||||||||||    
T  27260683 ggaaaaaaaataggctacaccaaaactaagttttccctttattaataggtat 27260734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 45623376 - 45623325
Alignment:
Q  169 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||||||||  ||||| ||  ||||||||||||||||    
T  45623376 ggaaagaaaataggctacaccaaaagaaagtattgcctttattaataggtat 45623325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 9334209 - 9334255
Alignment:
Q  175 aaaataggctacaccaaacaaaa-gttttctctttattaataggtat 220  Q
    ||||||||||||||||||||||| |||||  ||||||||||||||||    
T  9334209 aaaataggctacaccaaacaaaatgttttgcctttattaataggtat 9334255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 45623340 - 45623307
Alignment:
Q  223 ctttattaataggtatagaataataggtatagat 256  Q
    ||||||||||||||||||| ||||||||||||||    
T  45623340 ctttattaataggtatagattaataggtatagat 45623307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 26643095 - 26643043
Alignment:
Q  169 ggaaagaaaataggctacacc-aaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||||| ||| |||||| ||  ||||||||||||||||    
T  26643095 ggaaagaaaataggctacaccaaaagaaaagtattgcctttattaataggtat 26643043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 4e-36; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 119 - 220
Target Start/End: Complemental strand, 43591368 - 43591268
Alignment:
Q  119 gttttaactggcaaattgggaaattctcataaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttctctttattaataggt 218  Q
    ||||||| ||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  43591368 gttttaattggcatattggaaaattctcataaaa-aagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttccctttattaataggt 43591270  T
Q  219 at 220  Q
    ||    
T  43591269 at 43591268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 169 - 220
Target Start/End: Complemental strand, 581797 - 581746
Alignment:
Q  169 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||||||||  ||||| || |||||||||||||||||    
T  581797 ggaaagaaaataggctacaccaaattaaagtattgtctttattaataggtat 581746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 171 - 220
Target Start/End: Complemental strand, 581488 - 581439
Alignment:
Q  171 aaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||||||||| ||||| ||  ||||||||||||||||    
T  581488 aaagaaaataggctacaccaaactaaagtattgcctttattaataggtat 581439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Complemental strand, 43592244 - 43592211
Alignment:
Q  223 ctttattaataggtatagaataataggtatagat 256  Q
    ||||||||||||||||||| ||||||||||||||    
T  43592244 ctttattaataggtatagattaataggtatagat 43592211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 148 - 216
Target Start/End: Complemental strand, 28381846 - 28381778
Alignment:
Q  148 taaaagaagaagggtaatttgggaaagaaaataggctacaccaaacaaaagttttctctttattaatag 216  Q
    |||||||| ||||||||  ||||||||||| ||||||||||||||   |||||||| ||||||||||||    
T  28381846 taaaagaataagggtaaaatgggaaagaaagtaggctacaccaaaactaagttttccctttattaatag 28381778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 257 - 297
Target Start/End: Original strand, 5668242 - 5668282
Alignment:
Q  257 gataaacaactttgaccccacttattgaaatttcggaatcc 297  Q
    |||||||||  ||||||||||||||||||||||| ||||||    
T  5668242 gataaacaatattgaccccacttattgaaatttctgaatcc 5668282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 157 - 220
Target Start/End: Complemental strand, 22928177 - 22928113
Alignment:
Q  157 aagggtaatttgggaaag-aaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||| |||| | |||| ||||||||||||||| | ||||| |||||||||||||||||    
T  22928177 aagggtaattttggaatggaaaaaaggctacaccaaacacatgttttgtctttattaataggtat 22928113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 257 - 290
Target Start/End: Original strand, 11405927 - 11405960
Alignment:
Q  257 gataaacaactttgaccccacttattgaaatttc 290  Q
    |||||| |||||||||||||||||||||||||||    
T  11405927 gataaataactttgaccccacttattgaaatttc 11405960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 164 - 215
Target Start/End: Original strand, 22159166 - 22159218
Alignment:
Q  164 atttgggaaagaaaataggctacaccaaacaaaa-gttttctctttattaata 215  Q
    |||||||||| ||||||||||||||||||||||| |||||  |||||||||||    
T  22159166 atttgggaaaaaaaataggctacaccaaacaaaatgttttgcctttattaata 22159218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 169 - 220
Target Start/End: Original strand, 6509911 - 6509962
Alignment:
Q  169 ggaaagaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||| ||||||| ||||| ||  ||||||||||||||||    
T  6509911 ggaaagaaaataggctataccaaaccaaagtattggctttattaataggtat 6509962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 12252568 - 12252603
Alignment:
Q  255 atgataaacaactttgaccccacttattgaaatttc 290  Q
    ||||||||||| ||||||||||||||||||||||||    
T  12252568 atgataaacaattttgaccccacttattgaaatttc 12252603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 15718841 - 15718776
Alignment:
Q  156 gaagggtaatttgggaa-agaaaataggctacaccaaacaaaagttttctctttattaataggtat 220  Q
    ||||||||||||||||| |||||||| |||||||||||  || || ||  ||||||||||||||||    
T  15718841 gaagggtaatttgggaatagaaaatatgctacaccaaagtaatgtattgcctttattaataggtat 15718776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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