View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18788_low_6 (Length: 350)
Name: NF18788_low_6
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18788_low_6 |
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| [»] scaffold0728 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 11 - 346
Target Start/End: Complemental strand, 30614243 - 30613907
Alignment:
| Q |
11 |
catcatcattacatgtttctgtttcgcggtctctgttattcttgtatatggacnnnnnnn-aaagaatactgtgcagagatttggttattaataaatttt |
109 |
Q |
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| T |
30614243 |
catcatcattacatgtttctgtttcgctgtctctgttattcttgtatagggactttttttcaaagaatattgcgcagagatttggttattaataaacttt |
30614144 |
T |
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| Q |
110 |
ttcgttaataaaacattaacaggtaggtgacgttcctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaatatgcaacatggtggcac |
209 |
Q |
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| T |
30614143 |
tctgttaataaaatattaacaggtaggcgacgttcctcttcaggttcgtttttgtcggttatttgatttatcagaaaataaatatgcaacacggtggcgc |
30614044 |
T |
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| Q |
210 |
aaatatttaacttgcggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttatt |
309 |
Q |
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| T |
30614043 |
aaatatttaacttggggtgggacgaggggggaggcgtggaagtggagagaagtttacgggtgtgggaggaggagttggtagtagaatgtaggttgttatt |
30613944 |
T |
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| Q |
310 |
attgtatgtggtgttgcaggttgatgttgatgatgtc |
346 |
Q |
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| T |
30613943 |
attatatgtggtgttgcatattgatgttgatgatgtc |
30613907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 10382713 - 10382788
Alignment:
| Q |
271 |
gtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgatgttgatgatgtc |
346 |
Q |
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| T |
10382713 |
gtgggaggaggagttgttaggggaatctaggttgttattactaactgtggtgttgcaggttaatgttgatgatgtc |
10382788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Original strand, 17185679 - 17185729
Alignment:
| Q |
296 |
tgtaggttgttattattgtatgtggtgttgcaggttgatgttgatgatgtc |
346 |
Q |
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| T |
17185679 |
tgtaggtcgctattattgaatgttgtgttgcaggttaatgttgatgatgtc |
17185729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0728
Description:
Target: scaffold0728; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 1426 - 1536
Alignment:
| Q |
237 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgat |
334 |
Q |
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| T |
1426 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaat |
1524 |
T |
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| Q |
335 |
gttgatgatgtc |
346 |
Q |
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| T |
1525 |
gttgatgatgtc |
1536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0728; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 237 - 346
Target Start/End: Original strand, 6366 - 6476
Alignment:
| Q |
237 |
ggggaggcgtggaagtggaga--gaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgttattattgtatgtggtgttgcaggttgat |
334 |
Q |
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| T |
6366 |
ggggaggcatggaagtggagaaggaagtt-acgggcgtgggaggaggaaatgttagtggagtgtaggttgttattattgattgttgtgctgcaggttaat |
6464 |
T |
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| Q |
335 |
gttgatgatgtc |
346 |
Q |
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| T |
6465 |
gttgatgatgtc |
6476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 145 - 192
Target Start/End: Complemental strand, 25094807 - 25094760
Alignment:
| Q |
145 |
ctcttcaggtttgttttcgtcggttatttgatttatcaaaaaataaat |
192 |
Q |
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| T |
25094807 |
ctcttcaggtttgttttcgtcgcttatttattttatcagaaaataaat |
25094760 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 296 - 346
Target Start/End: Complemental strand, 1073826 - 1073776
Alignment:
| Q |
296 |
tgtaggttgttattattgtatgtggtgttgcaggttgatgttgatgatgtc |
346 |
Q |
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| T |
1073826 |
tgtaggatgttattattgtctgttgtattgcaggttaatgttgatgatgtc |
1073776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 307
Target Start/End: Complemental strand, 17620369 - 17620287
Alignment:
| Q |
227 |
tgggacgaggggg-gaggcgtggaagtggag-agaagtttacgggtgtgggaggaggagttggtagtaaaatgtaggttgtta |
307 |
Q |
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| T |
17620369 |
tgggacgagggggagaggcgtggaagtggaggaggaggttgtgggcgtgggagaaggagttggtagcagagtgtaggttgtta |
17620287 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 80 - 128
Target Start/End: Complemental strand, 13897252 - 13897204
Alignment:
| Q |
80 |
tgtgcagagatttggttattaataaattttttcgttaataaaacattaa |
128 |
Q |
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| T |
13897252 |
tgtgcagatatttagttattaataaattttatcgttaaaaaaatattaa |
13897204 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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