View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18788_low_7 (Length: 344)
Name: NF18788_low_7
Description: NF18788
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18788_low_7 |
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| [»] scaffold0022 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 13 - 321
Target Start/End: Original strand, 40797715 - 40798027
Alignment:
| Q |
13 |
atcatcaactcatcagagaagccacaagtggacttctgcatacggtaaatcattgctttatgtcttttgttatct--gtgttctcaatttttccttcctc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
40797715 |
atcatcaactcatcagagaagccacaagtggacttctgcatacggtaaatcattgctttatgtcttttgttatctctgtgttctcaatttttccttcctc |
40797814 |
T |
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| Q |
111 |
ttcataattatgtgtaattgaattttccatttatgtattttcttttttc--acaatacagacaacaattaaggaagaattgtgaaatttaagcaaggaac |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40797815 |
ttcataattatgtgtaattgaattttccatttatgtattttttttttttttacaatacagacaacaattaaggaagaattgtgaaatttaagcaaggaac |
40797914 |
T |
|
| Q |
209 |
aatgaagtgaaaatgagagtaaaaaggagtaagaccaatggataacaaggcaacatcatctgtaatggcgaaagaacatgagatgaccaacacatgctaa |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||||||| | ||| |
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| T |
40797915 |
aatgaagtgaaaatgagagtaaaaaggagtaagaccaacggataacaaggcaacatcatctgtaatgacgaaagagcatgagatgaccaacacaggataa |
40798014 |
T |
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| Q |
309 |
gaaaattagactg |
321 |
Q |
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||||||||||||| |
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| T |
40798015 |
gaaaattagactg |
40798027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 8848901 - 8848652
Alignment:
| Q |
13 |
atcatcaactcatcagagaagccacaagtggacttctgcatacggtaaatcattgctttatgtcttttgttatct--gtgttctcaatttttccttcctc |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
8848901 |
atcatcaactcatcagagaagccacaagtggacttctgcatacggtaaatcattgctttatgtcttttgttatctttgtgttctcaatttttccttcctc |
8848802 |
T |
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| Q |
111 |
ttcataattatgtgtaattgaattttccatttatgtattttcttttttc--acaatacagacaacaattaaggaagaattgtgaaatttaagcaaggaac |
208 |
Q |
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| T |
8848801 |
ttcataattatgtgtaattgaattttccatttatgcattttttttttttttacaatacagacaacaattaaggaagaattgtgaaatttaagcaaggaac |
8848702 |
T |
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| Q |
209 |
aatgaagtgaaaatgagagtaaaaaggagtaagaccaatggataacaagg |
258 |
Q |
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| T |
8848701 |
aatgaagtgaaaatgagagtaaaaaggagtaagaccaatggataacaagg |
8848652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 19702620 - 19702708
Alignment:
| Q |
13 |
atcatcaactcatcagagaag-ccacaagtggacttctgcatacggtaaat-cattgctttatgtcttttgtta--tctgtgttctcaa |
97 |
Q |
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||||||||| |||||||||| |||||| |||||||||||| ||||| || |||| |||||||| |||||||| ||||||||||||| |
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| T |
19702620 |
atcatcaacaaatcagagaaggccacaaacggacttctgcatgcggtagattcattactttatgtgttttgttatctctgtgttctcaa |
19702708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 207 - 298
Target Start/End: Complemental strand, 152607 - 152517
Alignment:
| Q |
207 |
acaatgaagtgaaaatgagagtaaaaaggagtaagaccaatggataacaaggcaacatcatctgtaatggcgaaagaacatgagatgaccaa |
298 |
Q |
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| T |
152607 |
acaatgaag-gaagatgagagtaaaaaggagtaagaccaatggataacaaggcaacatcatctgtaatggcgaaagaacatgagatgaccaa |
152517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 13 - 172
Target Start/End: Complemental strand, 152767 - 152604
Alignment:
| Q |
13 |
atcatcaactcatcagagaag-ccacaagtggacttctgcatacggtaaat-cattgctttatgtcttttgttatct--gtgttctcaatttttccttcc |
108 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||| | ||||| || | |
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| T |
152767 |
atcatcaattcatcagggaaggccacaagtggacttctgtatacggtaagttcattgctttatgtcttttgttatctcggtgttctcgacttttcatttc |
152668 |
T |
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| Q |
109 |
tcttcataattatgtgtaattgaattttccatttatgtattttcttttttcacaatacagacaa |
172 |
Q |
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||||||| ||| ||| ||||||||||||||||||||||||| ||| || |||||||||||| |
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| T |
152667 |
tcttcatgattcagtggcattgaattttccatttatgtattttttttcttttcaatacagacaa |
152604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 222 - 304
Target Start/End: Original strand, 39700885 - 39700967
Alignment:
| Q |
222 |
tgagagtaaaaaggagtaagaccaatggataacaaggcaacatcatctgtaatggcgaaagaacatgagatgaccaacacatg |
304 |
Q |
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| T |
39700885 |
tgagagtaaaaaggagtaagaccaatggataacaaggcaacatcatctgtaatggcgaaagaacatgagatgaccaatacatg |
39700967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 173
Target Start/End: Original strand, 39700711 - 39700875
Alignment:
| Q |
13 |
atcatcaactcatcagagaag-ccacaagtggacttctgcatacggtaaat-cattgctttatgtcttttgttatct--gtgttctcaatttttccttcc |
108 |
Q |
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|||||||| ||||||| |||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||||||| |||||||| | ||||| || | |
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| T |
39700711 |
atcatcaattcatcagggaaggccacaagtggacttctgtatacggtaagttcattgctttatgtcttttgttatctcggtgttctcgacttttcatttc |
39700810 |
T |
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| Q |
109 |
tcttcataattatgtgtaattgaattttccatttatgtattttcttttttcacaatacagacaac |
173 |
Q |
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||||||| ||| ||| ||||||||||||||||||||||||| ||| || ||||||||||||| |
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| T |
39700811 |
tcttcatgattcagtggcattgaattttccatttatgtattttttttcttttcaatacagacaac |
39700875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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