View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_high_10 (Length: 250)
Name: NF18789_high_10
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_high_10 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 42313936 - 42313714
Alignment:
| Q |
14 |
gaagcaattggcggagctgtttcgagaatctctgaaagcaactgtgcctagtgaacctgatgttgttcccttagttgaagcatgtgttgcaaataaaaat |
113 |
Q |
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| T |
42313936 |
gaagcaattggcggagctgtttcgagaatctctgaaagcaactgtgcctagtgaacctgatgttgttcccttagttgaagcatgtgttgcaaataaaaat |
42313837 |
T |
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| Q |
114 |
ggtgtaaaatatgctgattatcagtggtaagttatcagtgataagttagggtttgttgcttatgaaacaacttaccactttcttagaatagattatatta |
213 |
Q |
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| T |
42313836 |
ggtgtaaaacatgctgattatcagtggtaa--------------gttagggtttgttgcttatgaaacaacttaccactttcttagaatagattatatta |
42313751 |
T |
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| Q |
214 |
tatgaaaacaatttgacttgatcaaaattatgtacaa |
250 |
Q |
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| T |
42313750 |
tatgaaaacaatttgacttgatcaaaattatgtacaa |
42313714 |
T |
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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 47978807 - 47978732
Alignment:
| Q |
65 |
tgaacctgatgttgttcccttagttgaagcatgtgttgcaaataaaaatggtgtaaaatatgctgattatcagtggtaa |
143 |
Q |
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| T |
47978807 |
tgaacctgatgttgttcccttaattgatgcttgtgttcca---aaaaacggtgttaaacatgctgattatcaatggtaa |
47978732 |
T |
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