View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18789_low_1 (Length: 681)

Name: NF18789_low_1
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18789_low_1
NF18789_low_1
[»] chr5 (1 HSPs)
chr5 (18-664)||(2833121-2833758)


Alignment Details
Target: chr5 (Bit Score: 482; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 482; E-Value: 0
Query Start/End: Original strand, 18 - 664
Target Start/End: Original strand, 2833121 - 2833758
Alignment:
Q  18 aatttaataatttccaacctaatacggttaagaatnnnnnnnnnnnnntgatcatcataattcacactattaacaaaatccattttcatttcccagaaaa 117  Q
    |||||||||||||||||||||||||||||||||||             |||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  2833121 aatttaataatttccaacctaatacggttaagaataaaaaaaaata--tgatcatcataattcacactatta-caaaatccattttcatttcccagaaa- 2833216  T
Q  118 ttgaaatatgataggttaagaaatgttacttttttcactttatattataattgaaatctaggagnnnnnnnnctattattaataaaggtagcactaatga 217  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  2833217 ------tatgataggttaagaaatgttacttttttcactttatattataattgaaatctaggagaaaaaaaactattattaataaaggtagcactaatga 2833310  T
Q  218 cttatttacaactgtctt--aatttaatcagatcaaatttgatcataaaagattatcaaaaccctcagaacctaacagaaccaatacattagattattca 315  Q
    ||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833311 cttatttacaactgttttttaatttaatcagatcaaatttgatcataaaagattatcaaaaccctcagaacctaacagaaccaatacattagattattca 2833410  T
Q  316 ttctgagaaatatgaaagtaaagaaaatgaatatacaaaaattctgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcct 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833411 ttctgagaaatatgaaagtaaagaaaatgaatatacaaaaattctgagatgaacctaccttagtagcattgaattgaagcttaaaaacagctttaatcct 2833510  T
Q  416 attcttctcacttctccattttgaagaacgaaacatcttcacttcacatcacaaaactcacgtttcaaataagctcttaatcattttcatctctcccaaa 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833511 attcttctcacttctccattttgaagaacgaaacatcttcacttcacatcacaaaactcacgtttcaaataagctcttaatcattttcatctctcccaaa 2833610  T
Q  516 caactactccaccaactaaaacactnnnnnnnnnnncactaaactcggtggttcaactcgttggtatgaagcaaaacaaagtaacgtagcgtgtaagaac 615  Q
    ||| |||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2833611 caattactccaccaactaaaacact-aaaaaaaaaacactaaactcggtggttcaactcgttggtatgaagcaaaacaaagtaacgtagcgtgtaagaac 2833709  T
Q  616 agaacgagttaggaaactaagaagaaaacaagagatcttatgtttgttt 664  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||    
T  2833710 agaacgagttatgaaactaagaacaaaacaagagatcttatgtttgttt 2833758  T

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