View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_10 (Length: 374)
Name: NF18789_low_10
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 353
Target Start/End: Complemental strand, 2504547 - 2504209
Alignment:
| Q |
14 |
atcaacactagtcattattaaaaaagacagtttccaaatctagcaaagcttttggattctgtactacactatctattgatcttttggatctactacctct |
113 |
Q |
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| T |
2504547 |
atcaacactagtcattattaaaaaagacagtttccaaatctagcaaagcttttggattctgtactacactatctattgatcttttggatctactacctct |
2504448 |
T |
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| Q |
114 |
tcctccttatttgtgatggattagtaaccactaatcagcatggcttgtctctatctgattattatagtaaaacaataatctaatgcccacttttccacca |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||| |
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| T |
2504447 |
tcctccttatttgtgatggattagtaaccactaatcagcatggcttgtctctatctgattattatagtaaaccaatgatctaatgcccacttttccacca |
2504348 |
T |
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| Q |
214 |
taattgtttcccctagactctatcattactgttccgcgtaggtagctcagccggtgatctaagggataccgaagaagttttaagaatgagatccaggatt |
313 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2504347 |
taattgttt-ccctagactctatcattactgttccgcgtaggtagctcagccggtgatctaagggataccgaagaagttttaagaatgagatccaggatt |
2504249 |
T |
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| Q |
314 |
cgaactctgaaaactaacataactactaatttactaacga |
353 |
Q |
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| T |
2504248 |
cgaactctgaaaactaacataactactaatttactaacga |
2504209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 266 - 342
Target Start/End: Original strand, 1159431 - 1159507
Alignment:
| Q |
266 |
ggtgatctaagggataccgaagaagttttaagaatgagatccaggattcgaactctgaaaactaacataactactaa |
342 |
Q |
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| T |
1159431 |
ggtgagctaaggaatatcgaagaagttttaagaaagaggtctaagattcaaaccctgaaaactaacataaccactaa |
1159507 |
T |
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