View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18789_low_12 (Length: 339)

Name: NF18789_low_12
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18789_low_12
NF18789_low_12
[»] chr3 (51 HSPs)
chr3 (10-167)||(18104010-18104167)
chr3 (169-323)||(18103613-18103767)
chr3 (16-165)||(19437624-19437773)
chr3 (18-167)||(19352056-19352205)
chr3 (16-140)||(19334700-19334824)
chr3 (188-323)||(14895988-14896123)
chr3 (16-165)||(18147496-18147645)
chr3 (21-162)||(19393818-19393959)
chr3 (18-150)||(18016703-18016835)
chr3 (188-322)||(18144458-18144592)
chr3 (188-316)||(19399982-19400110)
chr3 (186-315)||(18147105-18147234)
chr3 (187-316)||(19414458-19414587)
chr3 (188-316)||(17942228-17942356)
chr3 (188-316)||(19351667-19351795)
chr3 (18-168)||(18165819-18165969)
chr3 (18-140)||(19376313-19376435)
chr3 (210-323)||(19381160-19381273)
chr3 (18-150)||(17942635-17942767)
chr3 (169-308)||(18016304-18016443)
chr3 (188-323)||(19424954-19425089)
chr3 (18-150)||(25463731-25463863)
chr3 (188-322)||(18116233-18116367)
chr3 (191-316)||(19334283-19334408)
chr3 (210-323)||(19375889-19376002)
chr3 (185-322)||(19393417-19393554)
chr3 (18-140)||(17726724-17726846)
chr3 (18-140)||(19027953-19028075)
chr3 (188-316)||(19437232-19437360)
chr3 (18-165)||(18873065-18873212)
chr3 (34-168)||(19465016-19465150)
chr3 (231-316)||(25463324-25463409)
chr3 (18-146)||(16677895-16678023)
chr3 (188-308)||(18873482-18873602)
chr3 (18-166)||(19354380-19354528)
chr3 (18-150)||(19381574-19381706)
chr3 (18-150)||(19414865-19414997)
chr3 (188-315)||(17727135-17727262)
chr3 (199-322)||(17950100-17950223)
chr3 (188-315)||(19028364-19028491)
chr3 (253-316)||(18165430-18165493)
chr3 (260-316)||(16677493-16677549)
chr3 (46-150)||(18109120-18109224)
chr3 (28-104)||(19439371-19439447)
chr3 (18-140)||(14895577-14895699)
chr3 (28-150)||(17950513-17950635)
chr3 (18-140)||(19400417-19400539)
chr3 (259-322)||(19464624-19464687)
chr3 (52-165)||(19425353-19425466)
chr3 (18-150)||(18116646-18116778)
chr3 (111-150)||(19461868-19461907)
[»] chr4 (4 HSPs)
chr4 (18-165)||(15536199-15536346)
chr4 (188-316)||(15535807-15535935)
chr4 (188-316)||(2710174-2710302)
chr4 (24-151)||(2709781-2709908)
[»] chr6 (2 HSPs)
chr6 (18-167)||(13666137-13666286)
chr6 (193-316)||(13666553-13666676)
[»] scaffold0274 (3 HSPs)
scaffold0274 (192-316)||(3175-3299)
scaffold0274 (18-165)||(21290-21436)
scaffold0274 (18-165)||(2760-2907)
[»] scaffold0640 (2 HSPs)
scaffold0640 (192-316)||(5677-5801)
scaffold0640 (18-165)||(6069-6216)
[»] scaffold0648 (2 HSPs)
scaffold0648 (18-165)||(3291-3438)
scaffold0648 (192-316)||(3706-3829)
[»] chr8 (1 HSPs)
chr8 (55-173)||(8460203-8460321)


Alignment Details
Target: chr3 (Bit Score: 146; Significance: 7e-77; HSPs: 51)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 10 - 167
Target Start/End: Complemental strand, 18104167 - 18104010
Alignment:
Q  10 aagaatatcaaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacataccta 109  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18104167 aagaaaatcaaataagagagattgaatagttgttgcagaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacataccta 18104068  T
Q  110 ctggtatagttccagaaaattcattttctcctaagttcatggtctgcaattgtttcaa 167  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  18104067 ctggtatagttccagaaaattcattttctcctacgttcatggtctgcaattgtttcaa 18104010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 169 - 323
Target Start/End: Complemental strand, 18103767 - 18103613
Alignment:
Q  169 acaaaagaatttgaaaggatattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtga 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18103767 acaaaagaatttgaaaggatattctttcgataaggctagagaacttctttctatctacaaacgaaattcccgagctcaatatgtcgagaacttgcagtga 18103668  T
Q  269 cttttgtgtatatatccaagatggaaagtgtgagccttgatttgtattactcaat 323  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18103667 cttttgtgtatatatccaaaatggaaagtgtgagccttgatttgtattactcaat 18103613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 19437773 - 19437624
Alignment:
Q  16 atcaaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggta 115  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||| ||||| |||||||||||||||    | |||||    
T  19437773 atcaaataagagagattgaatagttgttgcggaatagtcccttcaaatttattagctctcaatatgaccacttttaagttttgtgacatcatgattggta 19437674  T
Q  116 tagttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
    | ||||||||||||||||||||||||||||||||||| | ||||||||||    
T  19437673 tggttccagaaaattcattttctcctaagttcatggtttccaattgtttc 19437624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 18 - 167
Target Start/End: Complemental strand, 19352205 - 19352056
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| |||||| |||||  |||||||||||| ||||||||| ||||||| |||| |||||||||||||||| ||||| |||||     
T  19352205 caaataagagagattgaataattgttgtggaataatcccttcaaatttattggctctaaatatgaccactactaagttttgtgacatccctaccggtatg 19352106  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttcaa 167  Q
     |||||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  19352105 tttccagaaaattcattttctcccaagttcatggtctccaattctttcaa 19352056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 16 - 140
Target Start/End: Complemental strand, 19334824 - 19334700
Alignment:
Q  16 atcaaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggta 115  Q
    ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || ||||||||||||||| |||  |||||    
T  19334824 atcaaataagagagattgaatagttgttgtggaatagtcccttcaaattgattggctctcaatatgatcagttgtaagttttgtgacatccctgttggta 19334725  T
Q  116 tagttccagaaaattcattttctcc 140  Q
    |  ||||||||||||||||||||||    
T  19334724 tgcttccagaaaattcattttctcc 19334700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 188 - 323
Target Start/End: Original strand, 14895988 - 14896123
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| | |||||| |||||||| |||| ||| |||||||||||||| |||||| ||| | ||||| |||||||||||||||||||||||||||||    
T  14895988 tattctttctacaaggctcgagaacttatttctatccacaaacgaaattcctgagctcgataagtcgagatcttgcagtgacttttgtgtatatatccaa 14896087  T
Q  288 gatggaaagtgtgagccttgatttgtattactcaat 323  Q
    |||||||||| || ||||||||||||||||||||||    
T  14896088 gatggaaagtttgggccttgatttgtattactcaat 14896123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 16 - 165
Target Start/End: Complemental strand, 18147645 - 18147496
Alignment:
Q  16 atcaaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggta 115  Q
    |||||||||||||| |||||||||||||| ||||| ||||||||||||| ||| ||||||||||||| ||||  |||||||||||||||    | |||||    
T  18147645 atcaaataagagaggttgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccactagtaagttttgtgacatcatgattggta 18147546  T
Q  116 tagttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
    | ||||||||||||||||||||||||||||||||| | | ||||||||||    
T  18147545 tggttccagaaaattcattttctcctaagttcatgatttccaattgtttc 18147496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 162
Target Start/End: Complemental strand, 19393959 - 19393818
Alignment:
Q  21 ataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagtt 120  Q
    |||||||| ||||||||||||||| ||||| || |||||||||||||||||||||||||||| |||| |||||||||||| ||| || ||||||||  ||    
T  19393959 ataagagatattgaatagttgttgtggaatagtaccttcaaattgattggctctcaatatgaccactactaagttttgtggcatcccaactggtatgttt 19393860  T
Q  121 ccagaaaattcattttctcctaagttcatggtctgcaattgt 162  Q
    |||||||||||||||| ||| || |||||| |||||||||||    
T  19393859 ccagaaaattcattttttcccaaattcatgatctgcaattgt 19393818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 18016835 - 18016703
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| |||| | |||||  |||||||||||| ||||||||||||||||| ||||  ||||||||||||||| |||||||||||     
T  18016835 caaataagagagattgaataattgtcgtggaataatcccttcaaatttattggctctcaatatgaccactcttaagttttgtgacatccctactggtatg 18016736  T
Q  118 gttccagaaaattcattttctcctaagttcatg 150  Q
     |||||||||||||||||| ||| |||||||||    
T  18016735 tttccagaaaattcattttttcccaagttcatg 18016703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 18144592 - 18144458
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| |||||||| |||||||| |||| |||||| |||||||||||| ||||| ||||| |||||  |||||||||||| |||||||||||||||    
T  18144592 tattctttctataaggctcgagaacttatttctatctaccaacgaaattcccaagctcgatatgtcgagatgttgcagtgacttctgtgtatatatccaa 18144493  T
Q  288 gatggaaagtgtgagccttgatttgtattactcaa 322  Q
    ||||| |||| || ||||||||||||||| |||||    
T  18144492 gatgggaagtttgggccttgatttgtatttctcaa 18144458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 19400110 - 19399982
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| |||||  | |||||||| |||| ||||||||||||||||||||||||  ||| | |||||  ||||||||||||||||||||||||||||    
T  19400110 tattctttctataagattcgagaacttatttctatctacaaacgaaattcccgagcttgataagtcgagatgttgcagtgacttttgtgtatatatccaa 19400011  T
Q  288 gatggaaagtgtgagccttgatttgtatt 316  Q
    |||||||||| || |||||||||||||||    
T  19400010 gatggaaagtttgggccttgatttgtatt 19399982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 315
Target Start/End: Complemental strand, 18147234 - 18147105
Alignment:
Q  186 gatattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatcc 285  Q
    ||||||||||| |||||||| |||||||| |||| |||||| || |||||||| |||||  ||| | ||||||| |||||||||||||||||||||||||    
T  18147234 gatattctttctataaggctcgagaacttatttctatctacgaatgaaattcctgagcttgataagtcgagaacatgcagtgacttttgtgtatatatcc 18147135  T
Q  286 aagatggaaagtgtgagccttgatttgtat 315  Q
    |||||| ||||| || ||||||||||||||    
T  18147134 aagatgaaaagtttgggccttgatttgtat 18147105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 187 - 316
Target Start/End: Complemental strand, 19414587 - 19414458
Alignment:
Q  187 atattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatcca 286  Q
    |||||| ||| |||||||| |||||||| |||| |||||| || ||||||||||||||| ||| | ||||||| |||||| |||||||||||||||||||    
T  19414587 atattccttctataaggctcgagaacttatttctatctacgaatgaaattcccgagctcgataagtcgagaacatgcagtaacttttgtgtatatatcca 19414488  T
Q  287 agatggaaagtgtgagccttgatttgtatt 316  Q
    ||||||||||| || ||| |||||||||||    
T  19414487 agatggaaagtttgggccatgatttgtatt 19414458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 17942356 - 17942228
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| |||||||| |||||||| |||| |||||| ||||||||||| |||||| |||   | |||| ||| ||||||||||||||||||||||||    
T  17942356 tattctttctataaggctcgagaacttatttctatctaccaacgaaattcctgagctcgataaatcaagaagttgtagtgacttttgtgtatatatccaa 17942257  T
Q  288 gatggaaagtgtgagccttgatttgtatt 316  Q
    |||||||||| || |||||||||||||||    
T  17942256 gatggaaagtttgggccttgatttgtatt 17942228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 19351795 - 19351667
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| |||||||| |||||||| |||| |||||| || |||||||||| |||| ||||| |||||  ||||||||||||||||||||||||||||    
T  19351795 tattctttctataaggctcgagaacttatttctatctaccaatgaaattcccgtgctcgatatgtcgagattttgcagtgacttttgtgtatatatccaa 19351696  T
Q  288 gatggaaagtgtgagccttgatttgtatt 316  Q
    ||||||| || || |||||| ||||||||    
T  19351695 gatggaatgtttgggccttggtttgtatt 19351667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 168
Target Start/End: Complemental strand, 18165969 - 18165819
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||| |||||||||||||| |||| | ||||| |||||||||||||| || ||||||||||||| ||||||||| |||||||| ||    | ||||||     
T  18165969 caaattagagagattgaatatttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaacttttgtgaaatcaaaattggtatg 18165870  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttcaaa 168  Q
    ||||||||||||||||||||||| ||||||||| | | |||||| ||||||    
T  18165869 gttccagaaaattcattttctcccaagttcatgatttccaattggttcaaa 18165819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 19376435 - 19376313
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||||||||||||||||||||||||| ||||| ||||||||||||| ||| ||||||||||||| ||  | |||||||||||||||    | ||||||     
T  19376435 caaataagagagattgaatagttgttgtggaatagtcccttcaaatttattagctctcaatatgaccaaatataagttttgtgacatcttgattggtatg 19376336  T
Q  118 gttccagaaaattcattttctcc 140  Q
    |||||||||||||||||||||||    
T  19376335 gttccagaaaattcattttctcc 19376313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 19381273 - 19381160
Alignment:
Q  210 aacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatggaaagtgtgagccttgat 309  Q
    ||||| |||| |||||| ||||||||| ||| |||| ||| | ||||| ||| ||||||||||||||||||||||||| |||||||||||| ||||||||    
T  19381273 aacttatttctatctaccaacgaaattaccgcgctcgataagtcgagatctttcagtgacttttgtgtatatatccaacatggaaagtgtgggccttgat 19381174  T
Q  310 ttgtattactcaat 323  Q
    ||||||||||||||    
T  19381173 ttgtattactcaat 19381160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 17942767 - 17942635
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||| |||||||||||||||||||||||||| |||||||||||||| || ||||||||||||| ||||| |||||||||||| |  |  | ||||||     
T  17942767 caaataggagagattgaatagttgttgcggaatagtcccttcaaattggttagctctcaatatgaccacttgtaagttttgtgataagctgattggtatg 17942668  T
Q  118 gttccagaaaattcattttctcctaagttcatg 150  Q
    |||||| |||| ||||||||||| || ||||||    
T  17942667 gttccaaaaaactcattttctcccaaattcatg 17942635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 169 - 308
Target Start/End: Complemental strand, 18016443 - 18016304
Alignment:
Q  169 acaaaagaatttgaaaggatattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtga 268  Q
    |||||| ||| | ||||||||||||||| |||||||| |||||||| | || |||||| || |||||||||| |||| ||||| |||||  |||||||||    
T  18016443 acaaaacaatataaaaggatattctttctataaggctcgagaacttatatctatctaccaatgaaattcccgcgctcgatatgtcgagattttgcagtga 18016344  T
Q  269 cttttgtgtatatatccaagatggaaagtgtgagccttga 308  Q
     || ||||||||||||||||||||||||| || |||||||    
T  18016343 tttctgtgtatatatccaagatggaaagtttgggccttga 18016304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 188 - 323
Target Start/End: Complemental strand, 19425089 - 19424954
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| | |||||| |||||||| |||| || ||| || ||||||||||||||| ||| | |||||  ||||||||||||||||||||||||||||    
T  19425089 tattctttctacaaggctcgagaacttatttctatgtaccaatgaaattcccgagctcgataagtcgagactttgcagtgacttttgtgtatatatccaa 19424990  T
Q  288 gatggaaagtgtgagccttgatttgtattactcaat 323  Q
    |||||||||| ||  |||||||||||| | ||||||    
T  19424989 gatggaaagtttggcccttgatttgtactgctcaat 19424954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 25463863 - 25463731
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||| |||||||||||||||| | |||||  ||||||||||||| || ||||||||||||| ||||||||||| | ||| |||    | ||||||     
T  25463863 caaataagtgagattgaatagttgtggtggaatattcccttcaaattggtttgctctcaatatgaccacttctaagtatagtggcatgttcattggtatg 25463764  T
Q  118 gttccagaaaattcattttctcctaagttcatg 150  Q
    ||||||||||||||||||||||| |||||||||    
T  25463763 gttccagaaaattcattttctcccaagttcatg 25463731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 188 - 322
Target Start/End: Complemental strand, 18116367 - 18116233
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| |||||| |  |||||||||||| |||||| || |||||||||| |||| ||||| |||||  ||| |||| ||| |||||||||||||||    
T  18116367 tattctttctataaggttcaagaacttctttctatctaccaatgaaattcccgcgctcgatatgtcgagatattgaagtgtcttctgtgtatatatccaa 18116268  T
Q  288 gatggaaagtgtgagccttgatttgtattactcaa 322  Q
    |||||||||| || |||||||| |||||| |||||    
T  18116267 gatggaaagtttgggccttgatatgtatttctcaa 18116233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 191 - 316
Target Start/End: Complemental strand, 19334408 - 19334283
Alignment:
Q  191 tctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagat 290  Q
    |||||| |||||| | |||||||| | || |||||| || |||||||||||| |  |||   |||||||||||| |||||||||||||||||||||||||    
T  19334408 tctttctataaggttcgagaacttatgtctatctaccaatgaaattcccgagtttgataactcgagaacttgcaatgacttttgtgtatatatccaagat 19334309  T
Q  291 ggaaagtgtgagccttgatttgtatt 316  Q
    ||||||| || |||||||||||||||    
T  19334308 ggaaagtttgggccttgatttgtatt 19334283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 210 - 323
Target Start/End: Complemental strand, 19376002 - 19375889
Alignment:
Q  210 aacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatggaaagtgtgagccttgat 309  Q
    ||||| |||| |||||| ||  |||||||||||||| ||| || |||| |   ||||||||||||||||||||||||||||||||||| || ||||||||    
T  19376002 aacttatttctatctaccaataaaattcccgagctccataagcggagatcaaacagtgacttttgtgtatatatccaagatggaaagtttgggccttgat 19375903  T
Q  310 ttgtattactcaat 323  Q
    ||||||||||||||    
T  19375902 ttgtattactcaat 19375889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 185 - 322
Target Start/End: Complemental strand, 19393554 - 19393417
Alignment:
Q  185 ggatattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatc 284  Q
    |||||||||||| ||||| || |||||||| |||| || ||| | ||||||||| |||||| ||| | |||| | ||||| |||||| ||||||||||||    
T  19393554 ggatattctttctataagccttgagaacttatttctatttaccagcgaaattcctgagctcgataagtcgagtatttgcaatgacttctgtgtatatatc 19393455  T
Q  285 caagatggaaagtgtgagccttgatttgtattactcaa 322  Q
    || ||||||||||||| |||| |||||||||| |||||    
T  19393454 catgatggaaagtgtgggcctagatttgtatttctcaa 19393417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 17726724 - 17726846
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||| ||||||||||||||||||||   ||||| | ||||||||| |||||  ||| |||||||| || |||||||| |||||||||  ||||||||||     
T  17726724 caaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatg 17726823  T
Q  118 gttccagaaaattcattttctcc 140  Q
     ||||||||||||||||||||||    
T  17726824 tttccagaaaattcattttctcc 17726846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 19027953 - 19028075
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||| ||||||||||||||||||||   ||||| | ||||||||| |||||  ||| |||||||| || |||||||| |||||||||  ||||||||||     
T  19027953 caaagaagagagattgaatagttgtgcaggaataggcccttcaaaatgattacctcccaatatgaccatttctaagtgttgtgacatctctactggtatg 19028052  T
Q  118 gttccagaaaattcattttctcc 140  Q
     ||||||||||||||||||||||    
T  19028053 tttccagaaaattcattttctcc 19028075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 19437360 - 19437232
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| ||||||||  ||||||| |||| |||||| |||| ||||| ||||||| ||| | |||||  ||| |||||| |||| ||||||||||||    
T  19437360 tattctttctataaggctcaagaacttatttctatctaccaacgcaattctcgagctcgataagtcgagagattgtagtgacgtttgggtatatatccaa 19437261  T
Q  288 gatggaaagtgtgagccttgatttgtatt 316  Q
    |||||||| |||| ||||||| |||||||    
T  19437260 gatggaaactgtgggccttgagttgtatt 19437232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 18873065 - 18873212
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||| ||||||||| ||||||||| | | |||  ||||||||||||| || |||||||||||||  ||||||| ||||||||||||    | ||||||     
T  18873065 caaattagagagattaaatagttgtggtgaaatattcccttcaaattggttagctctcaatatgactacttctaggttttgtgacatcatgaatggtatg 18873164  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
     |||||||||||||||||||||| || |||| | ||||||| ||||||    
T  18873165 tttccagaaaattcattttctcccaaattcaagatctgcaactgtttc 18873212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 34 - 168
Target Start/End: Complemental strand, 19465150 - 19465016
Alignment:
Q  34 aatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcat 133  Q
    ||||||||| | ||||| |||||||||||||| || ||||||||||||| ||||||||||| |||||| ||    |  ||||| ||||||||||||||||    
T  19465150 aatagttgtggtggaatagtcccttcaaattggttagctctcaatatgaccacttctaagtcttgtgaaatcaagataggtatggttccagaaaattcat 19465051  T
Q  134 tttctcctaagttcatggtctgcaattgtttcaaa 168  Q
    |||| || ||||||||| | | |||||| ||||||    
T  19465050 tttcgcccaagttcatgttttccaattggttcaaa 19465016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 25463409 - 25463324
Alignment:
Q  231 gaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatggaaagtgtgagccttgatttgtatt 316  Q
    ||||||||||||||| ||| | |||||  |||||||||||| ||||||||||||||||| ||||||| || |||||||||||||||    
T  25463409 gaaattcccgagctcgataagtcgagatattgcagtgacttctgtgtatatatccaagaaggaaagtttgggccttgatttgtatt 25463324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 16678023 - 16677895
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||| |||||||||||||||  ||| | |||||  | |||||||| || || ||||||||||| |  ||||||||||||||||||||    | ||||||     
T  16678023 caaagaagagagattgaataactgtagtggaatacttccttcaaaatggttagctctcaatataacaacttctaagttttgtgacatcttaattggtatg 16677924  T
Q  118 gttccagaaaattcattttctcctaagtt 146  Q
    |||||||||||||||||||||||||||||    
T  16677923 gttccagaaaattcattttctcctaagtt 16677895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 188 - 308
Target Start/End: Original strand, 18873482 - 18873602
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||| |||||||| |||||||| |||| || ||| ||||||||| | | |||| ||||| |||||  || ||||||||| |||||||| ||||||    
T  18873482 tattctttctataaggctcgagaacttatttctatttaccaacgaaatttcggcgctcgatatgtcgagattttccagtgacttctgtgtatagatccaa 18873581  T
Q  288 gatggaaagtgtgagccttga 308  Q
    |||||||||| || |||||||    
T  18873582 gatggaaagtttgggccttga 18873602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 19354528 - 19354380
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||| ||||||||| ||||||||||| || ||  ||||||||||||| |||||||||||||||| ||||  ||||  |||||||||    | ||||||     
T  19354528 caaattagagagattaaatagttgttgtgggatattcccttcaaattggttggctctcaatatgaccactgttaaggattgtgacattttgattggtatg 19354429  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttca 166  Q
    |||||||||||||| ||  |||| ||||||||||| |  ||||||||||    
T  19354428 gttccagaaaattcgttagctcccaagttcatggtttctaattgtttca 19354380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 19381706 - 19381574
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| |||| | |||||  ||||||||||||| || |||||||||||||  | ||||||||||| ||| |     | ||||||     
T  19381706 caaataagagagattgaataattgtggtggaatattcccttcaaattggttagctctcaatatgacaatttctaagttttctgataagttcattggtatg 19381607  T
Q  118 gttccagaaaattcattttctcctaagttcatg 150  Q
    ||||||||||||||||||||||| || ||||||    
T  19381606 gttccagaaaattcattttctcccaaattcatg 19381574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 19414997 - 19414865
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||| ||||||||| ||||| ||| | ||||| |||||||||||| | ||  |||||||||||| |||||||||||| ||||||||    | ||||||     
T  19414997 caaatcagagagattaaatagctgtggtggaatagtcccttcaaatcggttatctctcaatatgaccacttctaagttctgtgacatcatgattggtatg 19414898  T
Q  118 gttccagaaaattcattttctcctaagttcatg 150  Q
    |||||| |||||||||||||||| || ||||||    
T  19414897 gttccataaaattcattttctcccaaattcatg 19414865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 17727135 - 17727262
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    |||||| || ||||| || || ||||| |||  |||||| || | |||||||||| || ||| | |||||  ||||| ||||||||||||||||||||||    
T  17727135 tattctctctataagtctcgaaaacttttttgtatctaccaatgtaattcccgagttcgataagtcgagattttgcaatgacttttgtgtatatatccaa 17727234  T
Q  288 gatggaaagtgtgagccttgatttgtat 315  Q
    |||||||||| ||||||| |||||||||    
T  17727235 gatggaaagtttgagcctggatttgtat 17727262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 199 - 322
Target Start/End: Complemental strand, 17950223 - 17950100
Alignment:
Q  199 taaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatggaaagtg 298  Q
    ||||||| |||||||| |||  |||||| |||||||||||||||||| ||| | | || | ||  || ||||||||||| |||||||| ||||||||||     
T  17950223 taaggctcgagaacttatttgtatctaccaacgaaattcccgagctcgataagtcaagcatttcgagagacttttgtgtttatatccaggatggaaagtt 17950124  T
Q  299 tgagccttgatttgtattactcaa 322  Q
    || ||||||||||||||| |||||    
T  17950123 tgggccttgatttgtatttctcaa 17950100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 188 - 315
Target Start/End: Original strand, 19028364 - 19028491
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    |||||| || ||||| || || ||||| |||  |||||| || | |||||||||| || ||| | |||||  ||||| ||||||||||||||||||||||    
T  19028364 tattctctctataagtctcgaaaacttttttgtatctaccaatgtaattcccgagttcgataagtcgagattttgcaatgacttttgtgtatatatccaa 19028463  T
Q  288 gatggaaagtgtgagccttgatttgtat 315  Q
    |||||||||| ||||||| |||||||||    
T  19028464 gatggaaagtttgagcctggatttgtat 19028491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 253 - 316
Target Start/End: Complemental strand, 18165493 - 18165430
Alignment:
Q  253 cgagaacttgcagtgacttttgtgtatatatccaagatggaaagtgtgagccttgatttgtatt 316  Q
    ||||| |||||||||| || |||||||||||||||||||||||||||| ||||||| |||||||    
T  18165493 cgagatcttgcagtgatttctgtgtatatatccaagatggaaagtgtgggccttgagttgtatt 18165430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 260 - 316
Target Start/End: Complemental strand, 16677549 - 16677493
Alignment:
Q  260 ttgcagtgacttttgtgtatatatccaagatggaaagtgtgagccttgatttgtatt 316  Q
    ||||| ||||||||||||||||||||| |||||||||| || |||||||||||||||    
T  16677549 ttgcaatgacttttgtgtatatatccatgatggaaagtttgggccttgatttgtatt 16677493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 150
Target Start/End: Complemental strand, 18109224 - 18109120
Alignment:
Q  46 ggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctaagt 145  Q
    ||||| || ||||||||||| || |||||||||||||  |||||||| |||||||| | |   | |||||| ||| ||||||||||||||||||| ||||    
T  18109224 ggaatagttccttcaaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaaattcattttctcccaagt 18109125  T
Q  146 tcatg 150  Q
    |||||    
T  18109124 tcatg 18109120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 104
Target Start/End: Complemental strand, 19439447 - 19439371
Alignment:
Q  28 agattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacat 104  Q
    ||||||||||||||||| ||||| || ||||||||||| ||  |||||||||| | |||| ||||||||||||||||    
T  19439447 agattgaatagttgttgtggaatagttccttcaaattggttatctctcaatattaccactcctaagttttgtgacat 19439371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 14895577 - 14895699
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||| ||| ||||||||||| |||| | |||||  ||||||||||||| || | ||||||||| | ||||| ||||| |||||||||      |||||||    
T  14895577 caaagaagtgagattgaataattgtggtggaatattcccttcaaattggttagatctcaatataaccacttgtaagtattgtgacatcatggttggtata 14895676  T
Q  118 gttccagaaaattcattttctcc 140  Q
    |||||| ||||||||||||||||    
T  14895677 gttccataaaattcattttctcc 14895699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 28 - 150
Target Start/End: Complemental strand, 17950635 - 17950513
Alignment:
Q  28 agattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaa 127  Q
    |||||||||| ||||   ||||| || ||||| ||||| || |||||||||||||  |||||||| |||||||| | |   | |||||| ||| ||||||    
T  17950635 agattgaataattgtgttggaatagttccttctaattggttagctctcaatatgacaacttctaatttttgtgataaattgattggtattgttgcagaaa 17950536  T
Q  128 attcattttctcctaagttcatg 150  Q
    ||||||||||||| |||||||||    
T  17950535 attcattttctcccaagttcatg 17950513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 140
Target Start/End: Complemental strand, 19400539 - 19400417
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||||||  |||||||||| ||||   ||||| |||||||||||||| || ||||||| |||||  ||||||||||||||||| |     | ||||||     
T  19400539 caaataagtaagattgaataattgtgttggaatagtcccttcaaattggttagctctcagtatgacaacttctaagttttgtgaaaagttgattggtatg 19400440  T
Q  118 gttccagaaaattcattttctcc 140  Q
    ||||| |||||||||||||||||    
T  19400439 gttcccgaaaattcattttctcc 19400417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 259 - 322
Target Start/End: Complemental strand, 19464687 - 19464624
Alignment:
Q  259 cttgcagtgacttttgtgtatatatccaagatggaaagtgtgagccttgatttgtattactcaa 322  Q
    |||||| |||||| ||||||||||| ||||||||||||| || |||||||||| |||| |||||    
T  19464687 cttgcaatgacttctgtgtatatattcaagatggaaagtttgggccttgatttatattgctcaa 19464624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 52 - 165
Target Start/End: Complemental strand, 19425466 - 19425353
Alignment:
Q  52 gtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctaagttcatgg 151  Q
    |||||||||||||| || |||||||||||||  |||||||| |||||||| |     | ||||||  |||| ||||||| ||||||||| ||  |||||     
T  19425466 gtcccttcaaattggttagctctcaatatgacgacttctaatttttgtgataagttcattggtatgattcctgaaaatttattttctcccaaaatcatga 19425367  T
Q  152 tctgcaattgtttc 165  Q
    ||||||||||||||    
T  19425366 tctgcaattgtttc 19425353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 150
Target Start/End: Complemental strand, 18116778 - 18116646
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||| || ||||||||||| ||||   |||||  ||||||||||||| ||  |||||| |||||  |||||||| | |||||  ||    | ||||||     
T  18116778 caaattagtgagattgaataattgtgttggaatactcccttcaaattggttacctctcagtatgactacttctaaatattgtggtatgttcaatggtatg 18116679  T
Q  118 gttccagaaaattcattttctcctaagttcatg 150  Q
    ||||||||||||||||||||||| |||||||||    
T  18116678 gttccagaaaattcattttctcccaagttcatg 18116646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 111 - 150
Target Start/End: Complemental strand, 19461907 - 19461868
Alignment:
Q  111 tggtatagttccagaaaattcattttctcctaagttcatg 150  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  19461907 tggtatggttccagaaaattcattttctcccaagttcatg 19461868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 7e-40; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 15536346 - 15536199
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| |||| |||||||  |||||||||||| ||||| ||||||||||| |||| ||||||||||||||||    | ||||||     
T  15536346 caaataagagagattgaataattgtggcggaataatcccttcaaatttattggttctcaatatgaccactactaagttttgtgacatcatgattggtatg 15536247  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
    ||||||||||||||||||||||| ||||||||||| ||||||||||||    
T  15536246 gttccagaaaattcattttctcccaagttcatggtttgcaattgtttc 15536199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 188 - 316
Target Start/End: Complemental strand, 15535935 - 15535807
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||||||  |||||| | |||||||| | ||  ||||| || ||||||||||||||| ||| | ||||||| |||||||  ||||||||||||||||||    
T  15535935 tattcttttaataaggtttgagaacttatctctgtctactaatgaaattcccgagctcgataagtcgagaacatgcagtgttttttgtgtatatatccaa 15535836  T
Q  288 gatggaaagtgtgagccttgatttgtatt 316  Q
    |||||||||| || |||||||||||||||    
T  15535835 gatggaaagtttgggccttgatttgtatt 15535807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 188 - 316
Target Start/End: Original strand, 2710174 - 2710302
Alignment:
Q  188 tattctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaa 287  Q
    ||||| ||| ||||| || |||||||| |||| ||||||  | |||||||| |||||| ||| | |||||| ||||| ||| ||||||||| ||||||||    
T  2710174 tattccttctataagtcttgagaacttatttctatctacggaggaaattcctgagctcgataagtcgagaaattgcaatgatttttgtgtacatatccaa 2710273  T
Q  288 gatggaaagtgtgagccttgatttgtatt 316  Q
    |||||||||| ||  |||||| |||||||    
T  2710274 gatggaaagtttggaccttgagttgtatt 2710302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 151
Target Start/End: Original strand, 2709781 - 2709908
Alignment:
Q  24 agagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttcca 123  Q
    |||||||||||||| ||||   ||||| ||||||| |||||| || |||||||||||||  ||||  || | ||| |||||    | |||||||||||||    
T  2709781 agagagattgaataattgtgttggaatagtccctttaaattggttagctctcaatatgagaactttcaaatcttgcgacatcttgattggtatagttcca 2709880  T
Q  124 gaaaattcattttctcctaagttcatgg 151  Q
    ||||||||||||||||||| ||||||||    
T  2709881 gaaaattcattttctcctaggttcatgg 2709908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 13666137 - 13666286
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    ||||||||||||||| ||||||||| | |||||  | |||||||||| |||  |||||||||||| |||||  |||||| |||| ||    | || |||     
T  13666137 caaataagagagattaaatagttgtgggggaatactgccttcaaatttattttctctcaatatgaccacttgaaagtttggtgaaatcaagattgttatg 13666236  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttcaa 167  Q
    ||||||  ||||||||||||||||||||||||||| ||||| ||||||||    
T  13666237 gttccattaaattcattttctcctaagttcatggtttgcaactgtttcaa 13666286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 193 - 316
Target Start/End: Original strand, 13666553 - 13666676
Alignment:
Q  193 tttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatgg 292  Q
    |||| |||||||| |||||||| |||   |||||  | |||||||| |||||| ||| |  |||||||||||||||||||||||| |||||||| |||||    
T  13666553 tttctataaggcttgagaacttatttttgtctacctatgaaattccggagctcgataagttgagaacttgcagtgacttttgtgtgtatatccatgatgg 13666652  T
Q  293 aaagtgtgagccttgatttgtatt 316  Q
    ||| | || |||||||||||||||    
T  13666653 aaaatatgggccttgatttgtatt 13666676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 3175 - 3299
Alignment:
Q  192 ctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatg 291  Q
    ||||| |||||||| |||||||| |||| |||||| || |||||||| |||||  |||    |||| |||| ||||||||||||||||||||||| | ||    
T  3175 ctttctataaggctcgagaacttatttctatctaccaatgaaattccagagctggataaatagagatcttgaagtgacttttgtgtatatatccaggctg 3274  T
Q  292 gaaagtgtgagccttgatttgtatt 316  Q
     ||||| || |||||||||||||||    
T  3275 aaaagtttgggccttgatttgtatt 3299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 21436 - 21290
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| |||| | ||||| |||| ||| ||||| || ||||| ||||||| ||||||||| | ||||| |||    | ||||||     
T  21436 caaataagagagattgaataattgtggtggaatagtcc-ttcgaattggttagctcttaatatgaccacttctaaatattgtggcatgttgattggtatg 21338  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
    ||||||||||| ||||||||||| || ||||||   ||||||||||||    
T  21337 gttccagaaaactcattttctcccaaattcatgaattgcaattgtttc 21290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 2760 - 2907
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| ||||   ||||| |||||||| ||||| || ||||| |||||||  |||||||| | ||||| |||    | ||||||     
T  2760 caaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatg 2859  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
    ||||||||||| ||||||||| | || ||||||   ||||||||||||    
T  2860 gttccagaaaactcattttcttccaaattcatgaattgcaattgtttc 2907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 5801 - 5677
Alignment:
Q  192 ctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatg 291  Q
    ||||| |||||||| |||||||| |||| |||||| || |||||||| |||||  |||    |||| |||| |||||| |||||||||||||||| | ||    
T  5801 ctttctataaggctcgagaacttatttctatctaccaatgaaattccagagctggataaatagagatcttgaagtgacgtttgtgtatatatccaggctg 5702  T
Q  292 gaaagtgtgagccttgatttgtatt 316  Q
     ||||| || |||||||||||||||    
T  5701 aaaagtttgggccttgatttgtatt 5677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 165
Target Start/End: Complemental strand, 6216 - 6069
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| ||||   ||||| |||||||| ||||| || ||||| |||||||  |||||||| | ||||| |||    | ||||||     
T  6216 caaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatg 6117  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
    ||||||||||| ||||||||| | || ||||||   ||||||||||||    
T  6116 gttccagaaaactcattttcttccaaattcatgaattgcaattgtttc 6069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 165
Target Start/End: Original strand, 3291 - 3438
Alignment:
Q  18 caaataagagagattgaatagttgttgcggaattgtcccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtata 117  Q
    |||||||||||||||||||| ||||   ||||| |||||||| ||||| || ||||| |||||||  |||||||| | ||||| |||    | ||||||     
T  3291 caaataagagagattgaataattgtgatggaatagtcccttcgaattggttagctcttaatatgacaacttctaaatattgtggcatgttgattggtatg 3390  T
Q  118 gttccagaaaattcattttctcctaagttcatggtctgcaattgtttc 165  Q
    ||||||||||| ||||||||| | || ||||||   ||||||||||||    
T  3391 gttccagaaaactcattttcttccaaattcatgaattgcaattgtttc 3438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 3706 - 3829
Alignment:
Q  192 ctttcgataaggctagagaacttctttcaatctacaaacgaaattcccgagctcaatatgccgagaacttgcagtgacttttgtgtatatatccaagatg 291  Q
    ||||| |||||||| |||||||| |||| |||||| || |||||||| |||||  |||    |||| |||| ||||||||| ||||||||||||| | ||    
T  3706 ctttctataaggctcgagaacttatttctatctaccaatgaaattccagagctggataaatagagatcttgaagtgacttt-gtgtatatatccaggctg 3804  T
Q  292 gaaagtgtgagccttgatttgtatt 316  Q
     ||||| || |||||||||||||||    
T  3805 aaaagtttgggccttgatttgtatt 3829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 173
Target Start/End: Complemental strand, 8460321 - 8460203
Alignment:
Q  55 ccttcaaattgattggctctcaatatgatcacttctaagttttgtgacatacctactggtatagttccagaaaattcattttctcctaagttcatggtct 154  Q
    ||||||||||| |||||||||||||||| ||||||||| |   |||||||    | ||| || ||||||||||||| ||||||||| ||||| ||  | |    
T  8460321 ccttcaaattggttggctctcaatatgaccacttctaaataccgtgacatgttcattggaatggttccagaaaattgattttctcccaagttaatcattt 8460222  T
Q  155 gcaattgtttcaaaacaaa 173  Q
     ||||||||||||| ||||    
T  8460221 ccaattgtttcaaatcaaa 8460203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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