View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18789_low_2 (Length: 587)

Name: NF18789_low_2
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18789_low_2
NF18789_low_2
[»] chr3 (4 HSPs)
chr3 (75-493)||(33584128-33584546)
chr3 (487-568)||(33591022-33591103)
chr3 (10-55)||(33584560-33584605)
chr3 (101-133)||(15259611-15259643)
[»] chr7 (2 HSPs)
chr7 (11-47)||(9987869-9987905)
chr7 (101-133)||(13937818-13937850)
[»] chr8 (1 HSPs)
chr8 (514-559)||(14331005-14331050)
[»] chr5 (2 HSPs)
chr5 (514-559)||(21724477-21724522)
chr5 (514-559)||(21804213-21804258)


Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 75 - 493
Target Start/End: Complemental strand, 33584546 - 33584128
Alignment:
Q  75 caaatagtacaaaggaaaaagaaaacaatccacccaccgaagcaacacaacacctaaaattcctacattacaaacaaaaattcaatcccctcatccatca 174  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33584546 caaacagtacaaaggaaaaagaaaacaatccacccaccgaagcaacacagcacctaaaattcctacattacaaacaaaaattcaatcccctcatccatca 33584447  T
Q  175 atttgacaacaccaaatgataaattcaatccggaactactgtcatcaagctaagccttctgcccccttctgccccattacaaacaaagttacatagaccg 274  Q
    |||| ||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33584446 attttacaacaccaaatgataaattcaatctgaaactactgtcatcaagccaagccttctgcccccttctgtcccattacaaacaaagttacatagaccg 33584347  T
Q  275 ataaacataaactacaatagttcaatatcatatnnnnnnnntcataactcaattaaatgaaagatcaaaatttaacaatatatatcaagattcccccaaa 374  Q
    ||||||||||||||||||||||||| |||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33584346 ataaacataaactacaatagttcaacatcatataaaaaaactcataactcaattaaatgaaagatcaaaatttaacaatatatatcaagattcccccaaa 33584247  T
Q  375 tcaaaaatccnnnnnnnaaacaacaaattttattaaccagcctccacacaagttgcgacgaaagccataaaaaccgaatacaaataattcgcgcccaaat 474  Q
    ||| |||||        ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||    
T  33584246 tcacaaatcgttcttttaaacaacaaattttattaaccagcctccacacaagttgcgacgcaagccataaaaaccgaatacaaatagttcgcacccaaat 33584147  T
Q  475 aattcacacccaaatacat 493  Q
    |||||||||||||||||||    
T  33584146 aattcacacccaaatacat 33584128  T

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Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 487 - 568
Target Start/End: Complemental strand, 33591103 - 33591022
Alignment:
Q  487 aatacatgacaaatcaataaaaaccctaatataacacaaaccacaatgtacacccaattggagcagcaaaaacccgccacta 568  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  33591103 aatacataacaaatcaataaaaaccctaatataacacaaaccacaatgtacacccaattggaacagcaaaatcccgccacta 33591022  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 33584605 - 33584560
Alignment:
Q  10 catcatcacacatgaacagcacaaaacacaacaaagttacatagac 55  Q
    |||||||||||||||||| |||||||||||||||||||||||||||    
T  33584605 catcatcacacatgaacaacacaaaacacaacaaagttacatagac 33584560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 101 - 133
Target Start/End: Original strand, 15259611 - 15259643
Alignment:
Q  101 aatccacccaccgaagcaacacaacacctaaaa 133  Q
    |||||||||||||||||||||||||||||||||    
T  15259611 aatccacccaccgaagcaacacaacacctaaaa 15259643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 9987905 - 9987869
Alignment:
Q  11 atcatcacacatgaacagcacaaaacacaacaaagtt 47  Q
    |||||||||||||| ||||||||||||||||||||||    
T  9987905 atcatcacacatgagcagcacaaaacacaacaaagtt 9987869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 133
Target Start/End: Complemental strand, 13937850 - 13937818
Alignment:
Q  101 aatccacccaccgaagcaacacaacacctaaaa 133  Q
    |||| ||||||||||||||||||||||||||||    
T  13937850 aatcaacccaccgaagcaacacaacacctaaaa 13937818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 14331050 - 14331005
Alignment:
Q  514 aatataacacaaaccacaatgtacacccaattggagcagcaaaaac 559  Q
    |||| ||||||||||||||  |||||||||||||| ||||||||||    
T  14331050 aataaaacacaaaccacaacatacacccaattggaacagcaaaaac 14331005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 21724522 - 21724477
Alignment:
Q  514 aatataacacaaaccacaatgtacacccaattggagcagcaaaaac 559  Q
    |||| ||||||||||||||  |||||||||||||| ||||||||||    
T  21724522 aataaaacacaaaccacaacatacacccaattggaacagcaaaaac 21724477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 514 - 559
Target Start/End: Complemental strand, 21804258 - 21804213
Alignment:
Q  514 aatataacacaaaccacaatgtacacccaattggagcagcaaaaac 559  Q
    |||| ||||||||||||||  |||||||||||||| ||||||||||    
T  21804258 aataaaacacaaaccacaacatacacccaattggaacagcaaaaac 21804213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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