View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_22 (Length: 239)
Name: NF18789_low_22
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 169; Significance: 9e-91; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 36337102 - 36336914
Alignment:
| Q |
33 |
tatttattttcagtttgggaaatagaaaaatcaaatactaactattgttgtgcatactggtcttgcttaggtgcaattttgaagggaaacgaagagaaaa |
132 |
Q |
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| T |
36337102 |
tatttattttcagtttgggaaatagaaaaatcaaatactaactattgttgtgcatactggtcttgcttaggtgcaattttgaagggcaacgaagggaaaa |
36337003 |
T |
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| Q |
133 |
gcaatgacggctgtggtgatggaatagagattcattgtggaaaagggtatgtcgatggaacaatatggaataaggatattagtattact |
221 |
Q |
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| T |
36337002 |
gcaatgacggttgtggtgatggaatagagattcattgtagaaaagggtatgtcgatggaacaatatgggataaggatattagtattact |
36336914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 34 - 194
Target Start/End: Complemental strand, 36345675 - 36345515
Alignment:
| Q |
34 |
atttattttcagtttgggaaatagaaaaatcaaatactaactattgttgtgcatactggtcttgcttaggtgcaattttgaagggaaacgaa-gagaaaa |
132 |
Q |
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| T |
36345675 |
atttatttttagtttgagaaatagaaaaatcaaatactaaccattattgtgcatattggtcagacttaggtgcaatctggaatggcaacaaaggagaaaa |
36345576 |
T |
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| Q |
133 |
gcaatgacggctgtggtgatggaatagagattcattgtggaaaagggtatgtcgatggaaca |
194 |
Q |
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| T |
36345575 |
-caatgacggatgtggtgatggaatagagggtcattgtggaaaagggtatatcgatgtaaca |
36345515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 36305597 - 36305434
Alignment:
| Q |
33 |
tatttattttcagtttgggaaatagaaaaatcaaatactaact---------attgttgtgcatactggtcttgcttaggtgcaattttgaagggaaacg |
123 |
Q |
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| T |
36305597 |
tatttatttttagcttgggaaatagaaaaatcaaatactaacattggagttgattgttgttcatactggttgggcttaggtgcaatcaggaatggcaaca |
36305498 |
T |
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| Q |
124 |
aagagaaaagcaatgacggctgtggtgatggaatagagattcattgtggaaaagggtatgtcga |
187 |
Q |
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| T |
36305497 |
aagggaaaaacaatgacgggtgtggtgatggaatagagggtcattgtggaaaagggtatgtcga |
36305434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 33 - 184
Target Start/End: Complemental strand, 36308945 - 36308785
Alignment:
| Q |
33 |
tatttattttcagtttgggaaatagaaaaatcaaatactaact---------attgttgtgcatactggtcttgcttaggtgcaattttgaagggaaacg |
123 |
Q |
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| T |
36308945 |
tatttattttcagcttgggaaatagaaaaatcaaaaactaacatttgagttgattgttgtgcatattggtcgggcttaggtgcaatctggaatggcaaca |
36308846 |
T |
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| Q |
124 |
aagagaaaagcaatgacggctgtggtgatggaatagagattcattgtggaaaagggtatgt |
184 |
Q |
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| T |
36308845 |
aagggaaaaacaatgacgggtatggtgatggaatagagggtcatagtggaaaggagtatgt |
36308785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 33 - 187
Target Start/End: Complemental strand, 36322912 - 36322749
Alignment:
| Q |
33 |
tatttattttcagtttgggaaatagaaaaatcaaatactaact---------attgttgtgcatactggtcttgcttaggtgcaattttgaagggaaacg |
123 |
Q |
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|||||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| ||||||||||||| | ||| || || |
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| T |
36322912 |
tatttattttcaaattgggaagtagaaaaatcaaatactaacattggagttgattgttgtgcatactggtcgggcttaggtgcaatctggaatggcaaaa |
36322813 |
T |
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| Q |
124 |
aagagaaaagcaatgacggctgtggtgatggaatagagattcattgtggaaaagggtatgtcga |
187 |
Q |
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| T |
36322812 |
aagggaaaaacattgatgggtttgttgatggaatagagggtcattgtggaaaagggtatgtcga |
36322749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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