View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_23 (Length: 238)
Name: NF18789_low_23
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_23 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 101; Significance: 3e-50; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 138 - 238
Target Start/End: Original strand, 42313543 - 42313643
Alignment:
| Q |
138 |
ctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgcatccagaa |
237 |
Q |
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| T |
42313543 |
ctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgcatccagaa |
42313642 |
T |
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| Q |
238 |
t |
238 |
Q |
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| T |
42313643 |
t |
42313643 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 18 - 73
Target Start/End: Original strand, 42313422 - 42313477
Alignment:
| Q |
18 |
aaagcacgattctaccatctctgatggagggagatttttcgcaatgccctacacac |
73 |
Q |
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| T |
42313422 |
aaagcacgattctaccatctctgatggagggagatttttcgcaatgccctacacac |
42313477 |
T |
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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 137 - 230
Target Start/End: Complemental strand, 39711708 - 39711615
Alignment:
| Q |
137 |
tctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgca |
230 |
Q |
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| T |
39711708 |
tctctgattatacctctccaagtgagcgtggatttttgaattccggttgttgctctttaatcttagcaaaaagactcattgcattgttactgca |
39711615 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 47978018 - 47978070
Alignment:
| Q |
20 |
agcacgattctaccatctctgatggagggagatttttcgcaatgccctacaca |
72 |
Q |
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| T |
47978018 |
agcacgattctaccatctctgatggagggagatttttcataatggcctacaca |
47978070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 137 - 238
Target Start/End: Original strand, 47978151 - 47978252
Alignment:
| Q |
137 |
tctcagattatacctctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgcatccaga |
236 |
Q |
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|||| |||||||||||||| | |||||| ||| || |||||| ||| ||||| ||||||| ||| |||||||||||| || |||||||||| || ||| |
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| T |
47978151 |
tctctgattatacctctccgactgaacgaggacttttgaattccggtcgcttccctttaatcttagcaaaaagactcattgcattattactgcgtcaaga |
47978250 |
T |
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| Q |
237 |
at |
238 |
Q |
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|| |
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| T |
47978251 |
at |
47978252 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 151 - 230
Target Start/End: Complemental strand, 51564814 - 51564735
Alignment:
| Q |
151 |
tctccaagtgaacgtggatttcggaattcgggttgcttctctttaataataggaaaaagactcatcgcgttattactgca |
230 |
Q |
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| T |
51564814 |
tctccaagtgaacgtggatttatgaactcctgttgcttccctttaatcttagcaaaaagactcattgcattattactgca |
51564735 |
T |
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