View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_24 (Length: 238)
Name: NF18789_low_24
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 17355963 - 17355838
Alignment:
| Q |
1 |
tcacgacaattgatcaagaaatgaaagatatgacccacaagatttgtaatggtagccataccaatacaagatcttgttctttcttaaaagaaaatcaaga |
100 |
Q |
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| T |
17355963 |
tcacgacaattgatcaagaaatgaaagataagacccataagatttgtaatggtagccataccaatacaagatcttgttctttcttaaaagaaaatcaaga |
17355864 |
T |
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| Q |
101 |
aacataagcccaaaaaacaaatatga |
126 |
Q |
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| T |
17355863 |
aacataagcccaaaaaacaaatatga |
17355838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 185 - 235
Target Start/End: Complemental strand, 17355818 - 17355768
Alignment:
| Q |
185 |
taagatgatgaaaatatgaagaagaaggggttcatgatgatgatgtccatc |
235 |
Q |
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||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
17355818 |
taagatgatgaaaatatgaagaagaagaggttcatgatgaagatgtccatc |
17355768 |
T |
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