View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_25 (Length: 237)
Name: NF18789_low_25
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_25 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 10 - 237
Target Start/End: Complemental strand, 43018180 - 43017953
Alignment:
| Q |
10 |
catcatcaaaagaagattaattagctagggttagctttttcaaatgaaaaataagtatatagatattcatttcaaactctgaggaatattgtacacagaa |
109 |
Q |
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| T |
43018180 |
catcatcaaaagaagattaattagctagggttagctttttcaaatgaaaaataagtatatagatattcatttcaaactctgaggaatattgtacacagaa |
43018081 |
T |
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| Q |
110 |
aacaatgcaatgaaaattgactggtccttttttccacgtcagcatagtcaaaagctaatcttgagcattttatacaaacaagacaaaggaatgcaaaaat |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
43018080 |
aacaatgcaatgaaaattgactggtccttttttccacgtcagcatagtcaaaagctaatattgagcattttatacaaacaagacaaaggaatgcaaaaat |
43017981 |
T |
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| Q |
210 |
acatgattatgtcaatgtcactagtagt |
237 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
43017980 |
acatgattatgtcaatgtcactagtagt |
43017953 |
T |
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