View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_26 (Length: 231)
Name: NF18789_low_26
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_26 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 722755 - 722525
Alignment:
| Q |
1 |
ccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtattagagcgtttacagatattattgaacatgtgatttataat |
100 |
Q |
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| T |
722755 |
ccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtattagagcgtttacagatattattgaacatgtgatttataat |
722656 |
T |
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| Q |
101 |
ggtgttaccgagcagcaagagttatatcgtgcaaatcttaacgggactgctagccttcctactcacatgctaccacaagcggcatattatactcctaatg |
200 |
Q |
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| T |
722655 |
ggtgttaccgagcagcaagagttatatcgtgcaaatctttacgggactgctagccttcctactcacatgctaccacaagcagcatattatactcctaatg |
722556 |
T |
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| Q |
201 |
attgtcaaattgtgccacaagaaattgatga |
231 |
Q |
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| T |
722555 |
attgtccaattgtgccacaagaaattgatga |
722525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 18331401 - 18331317
Alignment:
| Q |
1 |
ccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtattagagcgtttacagatattattgaa |
85 |
Q |
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| T |
18331401 |
ccatgaaaaacgcctcgaagtgatcactggtgtcaccaagatcatcaatgatgtatgtgttagagcttttacagatattattgaa |
18331317 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 17616450 - 17616536
Alignment:
| Q |
1 |
ccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtattagagcgtttacagatattattgaaca |
87 |
Q |
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| T |
17616450 |
ccatgaaaaacgcctcgagctgatcattgatgtcacaaagttcattaataatgtctgtattagagcttttacagatataattgaaca |
17616536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 46441246 - 46441332
Alignment:
| Q |
1 |
ccatgaaaaacgcctcgaattgatcactgatgtcacaaagtacatcaatgaagtatgtattagagcgtttacagatattattgaaca |
87 |
Q |
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| T |
46441246 |
ccatgaaaaacgcctcgaagtgatcaatgacatcaccaagttcatcaatgatgtatgtgttagagcttttacggatatcattgaaca |
46441332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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