View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18789_low_27 (Length: 230)

Name: NF18789_low_27
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18789_low_27
NF18789_low_27
[»] chr1 (7 HSPs)
chr1 (14-212)||(15490662-15490859)
chr1 (107-212)||(2701836-2701941)
chr1 (17-99)||(49331966-49332048)
chr1 (14-95)||(13405026-13405107)
chr1 (17-99)||(25824805-25824887)
chr1 (26-99)||(18063561-18063633)
chr1 (14-72)||(41207079-41207137)
[»] chr4 (5 HSPs)
chr4 (11-99)||(16056823-16056911)
chr4 (17-99)||(53947659-53947741)
chr4 (27-99)||(30650186-30650258)
chr4 (50-99)||(10178548-10178597)
chr4 (50-99)||(41524569-41524618)
[»] chr6 (3 HSPs)
chr6 (17-99)||(22224953-22225035)
chr6 (17-99)||(22250781-22250863)
chr6 (17-99)||(792598-792680)
[»] scaffold0811 (1 HSPs)
scaffold0811 (14-99)||(4865-4950)
[»] scaffold0535 (1 HSPs)
scaffold0535 (14-95)||(2312-2393)
[»] scaffold0013 (1 HSPs)
scaffold0013 (107-212)||(15241-15345)
[»] chr2 (3 HSPs)
chr2 (103-212)||(24760557-24760666)
chr2 (56-99)||(73063-73106)
chr2 (14-66)||(73116-73168)
[»] chr7 (5 HSPs)
chr7 (28-99)||(12560205-12560276)
chr7 (15-91)||(9005434-9005510)
chr7 (21-99)||(17220968-17221046)
chr7 (50-99)||(12697458-12697507)
chr7 (14-66)||(12697511-12697563)
[»] chr5 (1 HSPs)
chr5 (14-99)||(31104034-31104119)
[»] scaffold0153 (1 HSPs)
scaffold0153 (14-72)||(477-535)
[»] scaffold1468 (1 HSPs)
scaffold1468 (50-99)||(4-53)
[»] chr8 (1 HSPs)
chr8 (50-99)||(11432036-11432085)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 8e-85; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 14 - 212
Target Start/End: Complemental strand, 15490859 - 15490662
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagtgtatatattgatga 113  Q
    |||||||||||||||| ||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  15490859 aatatcaaatccccataaagattcatagctcaagagtcatgatggaagaacttatatcacaagctacataaga-tgtgcttgaagtgtatatattgatga 15490761  T
Q  114 taatgttcttaaaggtaatgatgaggcataaatgaagagattaaagaaaaacttagtagcagattttgaaatcaaagatttgggtcccctcaagtattt 212  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||    
T  15490760 taatgttcttaaaggtaatgatgaggcgtaaatggagagattaaagaaaaacttagtagtagattttgaaatcaaagatttgggtcccctcaaatattt 15490662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 107 - 212
Target Start/End: Complemental strand, 2701941 - 2701836
Alignment:
Q  107 ttgatgataatgttcttaaaggtaatgatgaggcataaatgaagagattaaagaaaaacttagtagcagattttgaaatcaaagatttgggtcccctcaa 206  Q
    ||||||||| | |||||| |||||||||||||  | ||||  |||||||||| | |||||||| ||||| ||||||||||||||| ||||||||||||||    
T  2701941 ttgatgatattattcttacaggtaatgatgagatagaaatagagagattaaaaagaaacttagcagcagtttttgaaatcaaagacttgggtcccctcaa 2701842  T
Q  207 gtattt 212  Q
    ||||||    
T  2701841 gtattt 2701836  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 49331966 - 49332048
Alignment:
Q  17 atcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||| ||| |||||||||||||||||| |||  ||||| |||||||||||| ||||||||||||| || | ||||||||||||    
T  49331966 atcatatctccatgaagattcatagcttaagaatcatgatggaagaacttacatcacaagctacacaatagtgtgcttgaagt 49332048  T

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Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 13405107 - 13405026
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttg 95  Q
    ||||||||||| ||||||| |||||||||| |||  ||||| ||||| |||||| ||||||||||||| || ||||||||||    
T  13405107 aatatcaaatctccatgaaaattcatagcttaagaatcatgatggaaaaacttacatcacaagctacacaaaaatgtgcttg 13405026  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 25824887 - 25824805
Alignment:
Q  17 atcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||| ||| |||||||||||||||||| |||  ||||| |||||||||||| ||||||| ||||| || | |||||| |||||    
T  25824887 atcatatctccatgaagattcatagctcaagaatcatgatggaagaacttacatcacaacctacacaatagtgtgctggaagt 25824805  T

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Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 99
Target Start/End: Complemental strand, 18063633 - 18063561
Alignment:
Q  26 ccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||||||||||||||||| |||  ||||| ||||||||| ||  ||||||| |||| |||||||||||||||||    
T  18063633 ccatgaagattcatagctcaagaatcatgatggaagaac-tacgtcacaagttacacaagaatgtgcttgaagt 18063561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Original strand, 41207079 - 41207137
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatca 72  Q
    ||||||| ||| |||||||||||||||||| |||  ||||| ||||||||||| |||||    
T  41207079 aatatcatatctccatgaagattcatagctcaagaatcatgatggaagaacttgtatca 41207137  T

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Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 99
Target Start/End: Original strand, 16056823 - 16056911
Alignment:
Q  11 aagaatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||| |||| ||| ||||||||||||||| || |||  ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  16056823 aagaagatcatatctccatgaagattcataactcaagaatcatgatggaagaacttacatcacaagctacataagaatgtgcttgaagt 16056911  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 53947741 - 53947659
Alignment:
Q  17 atcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||| ||| |||||||||||||||||| |||  ||||| |||||||||||| ||||||||||||| || | ||||||||||||    
T  53947741 atcatatctccatgaagattcatagctcaagaatcatgatggaagaacttacatcacaagctacacaatagtgtgcttgaagt 53947659  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 99
Target Start/End: Original strand, 30650186 - 30650258
Alignment:
Q  27 catgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||||||||||||  | |||  | ||| |||| ||||||| |||||||||||||||||||||||||||||||    
T  30650186 catgaagattcataaatcaagaattatgatggatgaacttacatcacaagctacataagaatgtgcttgaagt 30650258  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 10178548 - 10178597
Alignment:
Q  50 tcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||| ||||||||||||  |||||||||||||||||| |||||||||||    
T  10178548 tcatgatggaagaacttacttcacaagctacataagaaagtgcttgaagt 10178597  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 41524569 - 41524618
Alignment:
Q  50 tcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||| |||||||||||| |||||||| |||| |||| ||||||||||||    
T  41524569 tcatgatggaagaacttacatcacaagttacacaagagtgtgcttgaagt 41524618  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 22225035 - 22224953
Alignment:
Q  17 atcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||| ||| ||||||||||||||| || |||  ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  22225035 atcatatctccatgaagattcataactcaagaatcatgatggaagaacttacatcacaagctacataagaatgtgcttgaagt 22224953  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 22250863 - 22250781
Alignment:
Q  17 atcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||| ||| ||||||||||||||| || |||  ||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  22250863 atcatatctccatgaagattcataactcaagaatcatgatggaagaacttacatcacaagctacataagaatgtgcttgaagt 22250781  T

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Target: chr6; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 792680 - 792598
Alignment:
Q  17 atcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||| ||| |||||||||||||||||| |||  ||||| |||||||||||| ||||||||||||| |||| ||||||||||||    
T  792680 atcatatctccatgaagattcatagctcaagaatcatgatggaagaacttacatcacaagctacacaagagtgtgcttgaagt 792598  T

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Target: scaffold0811 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0811
Description:

Target: scaffold0811; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 99
Target Start/End: Complemental strand, 4950 - 4865
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||||| ||| |||||| ||||||||||| |||  ||||| |||||||||||| ||||||||||||| |||||||||||||||||    
T  4950 aatatcatatctccatgacgattcatagctcaagaatcatgatggaagaacttacatcacaagctacacaagaatgtgcttgaagt 4865  T

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Target: scaffold0535 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0535
Description:

Target: scaffold0535; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 14 - 95
Target Start/End: Complemental strand, 2393 - 2312
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttg 95  Q
    ||||||||||| |||||||||||||||||| |||  ||||| |||||||||||| |||||||| |||| |||||||||||||    
T  2393 aatatcaaatctccatgaagattcatagctcaagaatcatgatggaagaacttacatcacaagatacacaagaatgtgcttg 2312  T

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Target: scaffold0013 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 107 - 212
Target Start/End: Original strand, 15241 - 15345
Alignment:
Q  107 ttgatgataatgttcttaaaggtaatgatgaggcataaatgaagagattaaagaaaaacttagtagcagattttgaaatcaaagatttgggtcccctcaa 206  Q
    ||||||||| | |||||| ||||| |||||||  | ||||| |||||||||| | |||||||| ||||| ||||||||||||||| ||||||||||||||    
T  15241 ttgatgatattattcttacaggta-tgatgagatagaaatggagagattaaaaagaaacttagcagcagtttttgaaatcaaagacttgggtcccctcaa 15339  T
Q  207 gtattt 212  Q
    ||||||    
T  15340 gtattt 15345  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 103 - 212
Target Start/End: Complemental strand, 24760666 - 24760557
Alignment:
Q  103 tatattgatgataatgttcttaaaggtaatgatgaggcataaatgaagagattaaagaaaaacttagtagcagattttgaaatcaaagatttgggtcccc 202  Q
    ||||||||||||| | |||||| || ||||||||||  | ||||| ||||||||   |||||||||| | || |||||||||| ||||| ||||||||||    
T  24760666 tatattgatgatattattcttacagataatgatgagatagaaatggagagattattaaaaaacttagcaacatattttgaaattaaagaattgggtcccc 24760567  T
Q  203 tcaagtattt 212  Q
    ||||||||||    
T  24760566 tcaagtattt 24760557  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Complemental strand, 73106 - 73063
Alignment:
Q  56 tggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||| |||||| ||||||||||||| |||||||||||||||||    
T  73106 tggaataacttacatcacaagctacacaagaatgtgcttgaagt 73063  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 73168 - 73116
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaactt 66  Q
    ||||||| ||| |||||||||||||||||| |||  ||||| |||||||||||    
T  73168 aatatcatatctccatgaagattcatagctcaagaatcatgatggaagaactt 73116  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 12560205 - 12560276
Alignment:
Q  28 atgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||||||||| ||||| |||  ||||| ||||||| |||| ||||||||||||| |||||||||||||||||    
T  12560205 atgaagattcgtagctcaagaatcatgatggaagagcttacatcacaagctacacaagaatgtgcttgaagt 12560276  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 91
Target Start/End: Original strand, 9005434 - 9005510
Alignment:
Q  15 atatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtg 91  Q
    |||||| ||| | |||||||||||||||| ||| |||||| |||||||||||| ||||||| | ||| |||||||||    
T  9005434 atatcatatctctatgaagattcatagctcaagagtcatgatggaagaacttacatcacaatcgacacaagaatgtg 9005510  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 99
Target Start/End: Complemental strand, 17221046 - 17220968
Alignment:
Q  21 aatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    |||||||||  ||||||||| || |||  ||||| |||||||||||| || |||||||||| |||||||| ||||||||    
T  17221046 aatccccatatagattcataactcaagaatcatgatggaagaacttacattacaagctacacaagaatgttcttgaagt 17220968  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 12697507 - 12697458
Alignment:
Q  50 tcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||| |||||||||||| ||||||||||||| ||||||| |||||||||    
T  12697507 tcatgatggaagaacttacatcacaagctacacaagaatgagcttgaagt 12697458  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 12697563 - 12697511
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaactt 66  Q
    ||||||| ||| |||||||||||||||||| |||  ||||| |||||||||||    
T  12697563 aatatcatatctccatgaagattcatagctcaagaatcatgatggaagaactt 12697511  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 14 - 99
Target Start/End: Original strand, 31104034 - 31104119
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||||| ||| ||| ||||||||||| || |||  ||||  |||||||||||| ||||||||||||| |||||||| ||||||||    
T  31104034 aatatcatatctccaagaagattcatatctcaagaatcataatggaagaacttacatcacaagctacacaagaatgtacttgaagt 31104119  T

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Target: scaffold0153 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 72
Target Start/End: Complemental strand, 535 - 477
Alignment:
Q  14 aatatcaaatccccatgaagattcatagctaaagtgtcatggtggaagaacttatatca 72  Q
    ||||||| ||| |||||||||||||||||| |||  ||||| ||||||||||| |||||    
T  535 aatatcatatctccatgaagattcatagctcaagaatcatgatggaagaacttgtatca 477  T

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Target: scaffold1468 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1468
Description:

Target: scaffold1468; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 4 - 53
Alignment:
Q  50 tcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||| |||||||||||| ||||||||||||| || | ||||||||||||    
T  4 tcatgatggaagaacttacatcacaagctacacaatagtgtgcttgaagt 53  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 99
Target Start/End: Complemental strand, 11432085 - 11432036
Alignment:
Q  50 tcatggtggaagaacttatatcacaagctacataagaatgtgcttgaagt 99  Q
    ||||| |||||||||||| ||||||||||||| || | ||||||||||||    
T  11432085 tcatgatggaagaacttacatcacaagctacacaatagtgtgcttgaagt 11432036  T

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