View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_28 (Length: 227)
Name: NF18789_low_28
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 24 - 206
Target Start/End: Original strand, 14480116 - 14480314
Alignment:
| Q |
24 |
agacacgaacacattgacacttgacaccgataataatttggaaaaatgataaaattgaaagtaatcacatgcgttgttgttgtgtcggacacc------- |
116 |
Q |
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| T |
14480116 |
agacacgaacacattgacacttgacaccgataataatttggaaaaatgacaaaattgaaagtaatcacatgcgttgttgttttgtcggacaccggacgtg |
14480215 |
T |
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| Q |
117 |
---------agacatgtcactacagagtgtgtgagtgtaacgtgtttgtagaaaatgaaccaattattcactgctgcataggaattaaggctaaactat |
206 |
Q |
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| T |
14480216 |
tctttgatgagaagtgtcactacagagtgtgtgagtgtaacgtgtttgtagaaaatgaaccaattattcactgctgcataggaattaaggctaaactat |
14480314 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 115
Target Start/End: Complemental strand, 38749622 - 38749553
Alignment:
| Q |
46 |
gacaccgataataatttggaaaaatgataaaattgaaagtaatcacatgcgttgttgttgtgtcggacac |
115 |
Q |
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| T |
38749622 |
gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgttggtgttgtgtcggacac |
38749553 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 21148747 - 21148807
Alignment:
| Q |
54 |
taataatttggaaaaatgataaaattgaaagtaatcacatgcgttgttgttgtgtcggacac |
115 |
Q |
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| T |
21148747 |
taataatttg-aaaaatgacaaaatggaatgtaatgacatgagttggtgttgtgtcggacac |
21148807 |
T |
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