View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_3 (Length: 510)
Name: NF18789_low_3
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 280 - 510
Target Start/End: Complemental strand, 32272916 - 32272686
Alignment:
| Q |
280 |
aggttgttattatttgtgttaatgtaatgttttgtcctagatcttgctaccttattttattagtatatgccacaattcttatagtattattcttaatctc |
379 |
Q |
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| T |
32272916 |
aggttgttattatttgtgttaatgtaatgttttgtcctagatcttgctaccttattttattagtatatgccacaattcttatagtattattcttaatctc |
32272817 |
T |
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| Q |
380 |
attctttctcttgtttaatatgtctgcatgtgtatagaaaaacacacaagatttcattcatgtacaattgaatattctatatttgagaatgttctatgga |
479 |
Q |
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| T |
32272816 |
attctttctcttgtttaatatgtctgcatgtgtatagaaaaacacacaagatttcattcatgtacaattgaatattctatatttgagaatgttctatgga |
32272717 |
T |
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| Q |
480 |
tttaatattctttaattattttctcaattga |
510 |
Q |
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| T |
32272716 |
tttaatattcttttattattttctcaattga |
32272686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 57 - 180
Target Start/End: Complemental strand, 32273139 - 32273016
Alignment:
| Q |
57 |
tgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgcatgttgcttcgagactcattcctatttccttgttccctc |
156 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32273139 |
tgttttacgacattgcatcaaatttagcattgtttttcattattatagtaaatagatccgcatgttgcttcgagactcattcctatttccttgttccctc |
32273040 |
T |
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| Q |
157 |
agaaacagaaacaagtacaacgag |
180 |
Q |
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| T |
32273039 |
agaaacagaaacaagtacaacgag |
32273016 |
T |
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