View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18789_low_30 (Length: 222)

Name: NF18789_low_30
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18789_low_30
NF18789_low_30
[»] chr7 (2 HSPs)
chr7 (19-206)||(30078317-30078506)
chr7 (166-206)||(30070950-30070990)


Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 206
Target Start/End: Complemental strand, 30078506 - 30078317
Alignment:
Q  19 atttaatgcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccacccttta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078506 atttaatgcacactaactccctcattgagatttgaaacttgaatctctccacaaaaatccagtattaaatgctacagatgaaactctcacccacccttta 30078407  T
Q  119 cccct--nnnnnnnnntgccatcctaacccccctaagtttctccctcattttctctttctctccctcacaaatggagaattcccattttt 206  Q
    |||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30078406 cccctaaaaaaaaaaatgccatcctaacccccctaagtttctccctcattttctctttctctccctcacaaatggagaattcccattttt 30078317  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 30070990 - 30070950
Alignment:
Q  166 tttctctttctctccctcacaaatggagaattcccattttt 206  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  30070990 tttctctttctctccctcacaaatggagaattcccattttt 30070950  T

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