View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18789_low_4 (Length: 489)
Name: NF18789_low_4
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 34899719 - 34899335
Alignment:
| Q |
1 |
tatcttattataacatttgcatatgcttgtgtggtacgttacgcataaaaaccaagtggaacatgtcaactgacccactaattgaggttctcctaataac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
34899719 |
tatcttattataacatttgcatatgcttgtgtggtac-ttacgcataaaaaccaagtggaacatgtcaactgacccactagttgaggttctcctaataac |
34899621 |
T |
|
| Q |
101 |
taagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagannnn |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899620 |
taagaacatttttagagacacattttcgatattcaattttctgcattcagctaccaactaattatttgtaagtcttagcagacacttcttcatagatttt |
34899521 |
T |
|
| Q |
201 |
nnnngttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34899520 |
ttttgttgaagaagtcaaaaattatattaaacgaaaaagagatcccaataaatacaagttgagtttaagaaggatccaaatagcaccacaagaaacaatt |
34899421 |
T |
|
| Q |
301 |
agagaagtgtcaaaacaaaagggnnnnnnnnttcattgatgaattgtatagccctgatttttaaaattgagcaagactcttctgat |
386 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34899420 |
agagaagtgtcaaaacaaaagggaaaaaaaattcattgatgaattgtatagccctgatttttagaattgagcaagactcttctgat |
34899335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 427 - 474
Target Start/End: Complemental strand, 34899294 - 34899247
Alignment:
| Q |
427 |
tactataataactagttttttacaaggttaaaataaacgtatctgtaa |
474 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
34899294 |
tactataataaccagttttttacgaggttaaaataaacgtatctgtaa |
34899247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University