View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18789_low_5 (Length: 474)
Name: NF18789_low_5
Description: NF18789
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18789_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 88 - 464
Target Start/End: Original strand, 5353997 - 5354373
Alignment:
| Q |
88 |
attcttcagcaaactataataggagtgatttcaagtttcaatctttcaagtttctgaactagccttttcgagatgcatattgctgtagtggtggatttgg |
187 |
Q |
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| T |
5353997 |
attcttcagcaaactataataggagtgatttcaagtttcaatctttcaagtttctgaaccagccttttcgagatgcatattgctgtagtggtggatttgg |
5354096 |
T |
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| Q |
188 |
tggatctgtatttggttccaagttgaatttgtctcctccccttgcctggatgacaaatcgataccacactcactgcaaccaggactgattccgacgccgg |
287 |
Q |
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| T |
5354097 |
tggatctgtatttggttccaagttgaattcgtctccttcccttgcctggatgacaaatcgataccacactcactgcaaccaggactggttccgacgccgg |
5354196 |
T |
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| Q |
288 |
tgtcgtacccaccaccattaatcaaattcaaccttaattaaaatggaatatcaaaaacatttagtgtcaaacataaacgacactgatacggttttgccag |
387 |
Q |
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| T |
5354197 |
agtcgtacccaccaccattaatcaaattcaaccttaattgaaatggaatatcaaaaacatttagtgtcaaacataaacgacactgatacggttttgccag |
5354296 |
T |
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| Q |
388 |
tggattttccggcgacgatgagtaacttgcaatggtaggtgaattgagaagaaagcgaaggtgatgatttgatgatg |
464 |
Q |
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| T |
5354297 |
tggattttccggcgacgatgagtaacttgcaatggtaggtgaattgagaagaaagcgaaggtgatgatttgatgatg |
5354373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 5353926 - 5353955
Alignment:
| Q |
18 |
gtacgtagtgaacaatatgattaaaaatca |
47 |
Q |
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| T |
5353926 |
gtacgtagtgaacaatatgattaaaaatca |
5353955 |
T |
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